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{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# π TensorFlow β PyTorch Conversion\n",
"\n",
"This section guides you through converting the PatentBERT model from TensorFlow to PyTorch and uploading it to Hugging Face Hub.\n",
"\n",
"## π Conversion Plan:\n",
"\n",
"1. **TensorFlow Model Download** (previous cells)\n",
"2. **Weight Extraction** - Extract parameters from TensorFlow checkpoint\n",
"3. **PyTorch Conversion** - Create equivalent PyTorch model\n",
"4. **Model Testing** - Verify that the conversion works\n",
"5. **Hugging Face Upload** - Publish to Hub for public use\n",
"\n",
"## β οΈ Prerequisites:\n",
"- PatentBERT model downloaded (run previous cells first)\n",
"- Python 3.7+ with TensorFlow 1.15\n",
"- Separate environment with PyTorch to avoid conflicts"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Environment verification...\n",
"Python: 3.7.16 (default, Jan 17 2023, 22:20:44) \n",
"[GCC 11.2.0]\n",
"TensorFlow: 1.15.0\n",
"NumPy: 1.21.5\n",
"\n",
"π Checking model files in ./:\n",
"β
model.ckpt-181172.data-00000-of-00001\n",
"β
model.ckpt-181172.index\n",
"β
model.ckpt-181172.meta\n",
"β
bert_config.json\n",
"β
vocab.txt\n",
"\n",
"β
All model files are present!\n",
"π Created: /tmp/patentbert_conversion\n",
"π Created: /tmp/patentbert_conversion/tf_weights\n",
"π Created: /tmp/patentbert_conversion/pytorch_model\n",
"\n",
"π― Ready for conversion!\n",
"π Working directories configured\n"
]
}
],
"source": [
"# Step 1: Environment verification and preparation\n",
"\n",
"import os\n",
"import sys\n",
"import json\n",
"import numpy as np\n",
"import tensorflow as tf\n",
"\n",
"print(\"π Environment verification...\")\n",
"print(f\"Python: {sys.version}\")\n",
"print(f\"TensorFlow: {tf.__version__}\")\n",
"print(f\"NumPy: {np.__version__}\")\n",
"\n",
"# Verify that PatentBERT model has been downloaded\n",
"model_folder = './'\n",
"required_files = [\n",
" 'model.ckpt-181172.data-00000-of-00001',\n",
" 'model.ckpt-181172.index',\n",
" 'model.ckpt-181172.meta',\n",
" 'bert_config.json',\n",
" 'vocab.txt'\n",
"]\n",
"\n",
"print(f\"\\nπ Checking model files in {model_folder}:\")\n",
"missing_files = []\n",
"for file in required_files:\n",
" filepath = os.path.join(model_folder, file)\n",
" if os.path.exists(filepath):\n",
" print(f\"β
{file}\")\n",
" else:\n",
" print(f\"β {file} - MISSING\")\n",
" missing_files.append(file)\n",
"\n",
"if missing_files:\n",
" print(f\"\\nβ οΈ Missing files: {missing_files}\")\n",
" print(\"π‘ Please run the previous cells first to download the model\")\n",
"else:\n",
" print(\"\\nβ
All model files are present!\")\n",
"\n",
"# Create working directories for conversion\n",
"conversion_dir = \"/tmp/patentbert_conversion\"\n",
"tf_weights_dir = os.path.join(conversion_dir, \"tf_weights\")\n",
"pytorch_dir = os.path.join(conversion_dir, \"pytorch_model\")\n",
"\n",
"for dir_path in [conversion_dir, tf_weights_dir, pytorch_dir]:\n",
" os.makedirs(dir_path, exist_ok=True)\n",
" print(f\"π Created: {dir_path}\")\n",
"\n",
"print(f\"\\nπ― Ready for conversion!\")\n",
"print(f\"π Working directories configured\")"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Extracting weights from TensorFlow PatentBERT model...\n",
"π Model configuration:\n",
" β’ Hidden size: 768\n",
" β’ Number of layers: 12\n",
" β’ Attention heads: 12\n",
" β’ Vocabulary size: 30522\n",
"π Found 604 variables in checkpoint\n",
"π 176 important variables to extract\n",
"π Extraction in progress...\n",
" Progress: 20/176 (11.4%)\n",
" Progress: 20/176 (11.4%)\n",
" Progress: 40/176 (22.7%)\n",
" Progress: 40/176 (22.7%)\n",
" Progress: 60/176 (34.1%)\n",
" Progress: 60/176 (34.1%)\n",
" Progress: 80/176 (45.5%)\n",
" Progress: 80/176 (45.5%)\n",
" Progress: 100/176 (56.8%)\n",
" Progress: 100/176 (56.8%)\n",
" Progress: 120/176 (68.2%)\n",
" Progress: 120/176 (68.2%)\n",
" Progress: 140/176 (79.5%)\n",
" Progress: 140/176 (79.5%)\n",
" Progress: 160/176 (90.9%)\n",
" Progress: 160/176 (90.9%)\n",
" Progress: 176/176 (100.0%)\n",
"β
Extraction completed!\n",
"π Weights saved in: /tmp/patentbert_conversion/tf_weights\n",
"π 176 weights extracted\n",
"πΎ Total size: 419.5 MB\n",
"\n",
"π Examples of created files:\n",
" β’ bert_config.json\n",
" β’ bert_embeddings_LayerNorm_gamma.npy\n",
" β’ bert_embeddings_position_embeddings.npy\n",
" β’ bert_embeddings_token_type_embeddings.npy\n",
" β’ bert_embeddings_word_embeddings.npy\n",
" ... and 174 other files\n",
"\n",
"π Extraction successful!\n",
" Progress: 176/176 (100.0%)\n",
"β
Extraction completed!\n",
"π Weights saved in: /tmp/patentbert_conversion/tf_weights\n",
"π 176 weights extracted\n",
"πΎ Total size: 419.5 MB\n",
"\n",
"π Examples of created files:\n",
" β’ bert_config.json\n",
" β’ bert_embeddings_LayerNorm_gamma.npy\n",
" β’ bert_embeddings_position_embeddings.npy\n",
" β’ bert_embeddings_token_type_embeddings.npy\n",
" β’ bert_embeddings_word_embeddings.npy\n",
" ... and 174 other files\n",
"\n",
"π Extraction successful!\n"
]
}
],
"source": [
"# Step 2: TensorFlow model weights extraction\n",
"\n",
"print(\"π Extracting weights from TensorFlow PatentBERT model...\")\n",
"\n",
"def extract_tf_weights():\n",
" \"\"\"Extract all weights from TensorFlow checkpoint\"\"\"\n",
" \n",
" # File paths\n",
" checkpoint_path = \"./model.ckpt-181172\"\n",
" config_path = \"./bert_config.json\"\n",
" vocab_path = \"./vocab.txt\"\n",
" \n",
" # Read BERT configuration\n",
" with open(config_path, 'r') as f:\n",
" config = json.load(f)\n",
" \n",
" print(f\"π Model configuration:\")\n",
" print(f\" β’ Hidden size: {config.get('hidden_size', 768)}\")\n",
" print(f\" β’ Number of layers: {config.get('num_hidden_layers', 12)}\")\n",
" print(f\" β’ Attention heads: {config.get('num_attention_heads', 12)}\")\n",
" print(f\" β’ Vocabulary size: {config.get('vocab_size', 30522)}\")\n",
" \n",
" # List all variables in checkpoint\n",
" var_list = tf.train.list_variables(checkpoint_path)\n",
" print(f\"π Found {len(var_list)} variables in checkpoint\")\n",
" \n",
" # Filter important variables (ignore optimization variables)\n",
" skip_patterns = ['adam', 'beta', 'global_step', 'learning_rate']\n",
" important_vars = []\n",
" \n",
" for name, shape in var_list:\n",
" if not any(pattern in name.lower() for pattern in skip_patterns):\n",
" important_vars.append((name, shape))\n",
" \n",
" print(f\"π {len(important_vars)} important variables to extract\")\n",
" \n",
" # Extract and save weights\n",
" weights_info = {}\n",
" total_size = 0\n",
" \n",
" print(\"π Extraction in progress...\")\n",
" for i, (name, shape) in enumerate(important_vars):\n",
" try:\n",
" # Load variable\n",
" weight = tf.train.load_variable(checkpoint_path, name)\n",
" \n",
" # Create safe filename\n",
" safe_name = name.replace('/', '_').replace(':', '_').replace(' ', '_')\n",
" filename = f\"{safe_name}.npy\"\n",
" \n",
" # Save in NumPy format\n",
" filepath = os.path.join(tf_weights_dir, filename)\n",
" np.save(filepath, weight)\n",
" \n",
" # Record metadata\n",
" weights_info[name] = {\n",
" 'filename': filename,\n",
" 'shape': list(shape),\n",
" 'dtype': str(weight.dtype),\n",
" 'size_mb': weight.nbytes / (1024 * 1024)\n",
" }\n",
" \n",
" total_size += weight.nbytes\n",
" \n",
" # Show progress\n",
" if (i + 1) % 20 == 0 or (i + 1) == len(important_vars):\n",
" print(f\" Progress: {i + 1}/{len(important_vars)} ({(i+1)/len(important_vars)*100:.1f}%)\")\n",
" \n",
" except Exception as e:\n",
" print(f\"β οΈ Error for {name}: {e}\")\n",
" continue\n",
" \n",
" # Create complete metadata\n",
" metadata = {\n",
" 'model_info': {\n",
" 'name': 'PatentBERT',\n",
" 'source': 'TensorFlow',\n",
" 'checkpoint_path': checkpoint_path,\n",
" 'extraction_date': '2025-07-20'\n",
" },\n",
" 'config': config,\n",
" 'weights_info': weights_info,\n",
" 'statistics': {\n",
" 'total_weights': len(weights_info),\n",
" 'total_size_mb': total_size / (1024 * 1024),\n",
" 'original_variables': len(var_list),\n",
" 'extracted_variables': len(weights_info)\n",
" }\n",
" }\n",
" \n",
" # Save metadata\n",
" metadata_path = os.path.join(tf_weights_dir, 'extraction_metadata.json')\n",
" with open(metadata_path, 'w') as f:\n",
" json.dump(metadata, f, indent=2)\n",
" \n",
" # Copy configuration files\n",
" import shutil\n",
" shutil.copy(config_path, os.path.join(tf_weights_dir, 'bert_config.json'))\n",
" shutil.copy(vocab_path, os.path.join(tf_weights_dir, 'vocab.txt'))\n",
" \n",
" print(f\"β
Extraction completed!\")\n",
" print(f\"π Weights saved in: {tf_weights_dir}\")\n",
" print(f\"π {len(weights_info)} weights extracted\")\n",
" print(f\"πΎ Total size: {total_size / (1024 * 1024):.1f} MB\")\n",
" \n",
" # Show some examples of extracted weights\n",
" print(f\"\\nπ Examples of created files:\")\n",
" files = sorted(os.listdir(tf_weights_dir))\n",
" for i, file in enumerate(files[:5]):\n",
" print(f\" β’ {file}\")\n",
" if len(files) > 5:\n",
" print(f\" ... and {len(files) - 5} other files\")\n",
" \n",
" return tf_weights_dir, metadata\n",
"\n",
"# Execute extraction\n",
"try:\n",
" weights_dir, metadata = extract_tf_weights()\n",
" print(\"\\nπ Extraction successful!\")\n",
" \n",
"except Exception as e:\n",
" print(f\"β Error during extraction: {e}\")\n",
" import traceback\n",
" traceback.print_exc()"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"π― Converting TensorFlow weights to PyTorch format...\n",
"β
CORRECTED upload script created!\n",
"\n",
"π§ Key corrections:\n",
" β
Accepts BOTH model.safetensors AND pytorch_model.bin\n",
" β
Automatically detects model format\n",
" β
Improved error messages\n",
" β
Better commit message with format info\n",
" β
Proper torch import for testing\n",
"\n",
"π NOW RUN THIS CORRECTED COMMAND:\n",
" python /tmp/upload_to_hf.py patentbert_conversion/pytorch_model ZoeYou/patentbert-pytorch xxxxx\n",
"\n",
"π‘ Or use the new corrected script:\n",
" python /tmp/upload_to_hf_corrected.py patentbert_conversion/pytorch_model ZoeYou/patentbert-pytorch xxxxx\n"
]
}
],
"source": [
"# Step 3: Convert TensorFlow weights to PyTorch format\n",
"\n",
"print(\"π― Converting TensorFlow weights to PyTorch format...\")\n",
"\n",
"corrected_upload_script = \"\"\"#!/usr/bin/env python3\n",
"import os\n",
"import sys\n",
"from huggingface_hub import HfApi, create_repo, upload_folder\n",
"from transformers import BertForSequenceClassification, BertTokenizer\n",
"\n",
"def check_model_files(model_dir):\n",
" \\\"\\\"\\\"Check for required model files with support for both formats.\\\"\\\"\\\"\n",
" \n",
" # Required base files\n",
" required_base = ['config.json', 'vocab.txt', 'tokenizer_config.json']\n",
" \n",
" # Model files (at least one of these)\n",
" model_files = ['model.safetensors', 'pytorch_model.bin']\n",
" \n",
" missing_base = []\n",
" for file in required_base:\n",
" if not os.path.exists(os.path.join(model_dir, file)):\n",
" missing_base.append(file)\n",
" \n",
" # Check for at least one model file\n",
" found_model_files = []\n",
" for f in model_files:\n",
" if os.path.exists(os.path.join(model_dir, f)):\n",
" found_model_files.append(f)\n",
" \n",
" if missing_base:\n",
" print(f\"β Missing required files: {missing_base}\")\n",
" return False\n",
" \n",
" if not found_model_files:\n",
" print(f\"β No model file found. Expected one of: {model_files}\")\n",
" return False\n",
" \n",
" # Show found files\n",
" all_files = os.listdir(model_dir)\n",
" print(f\"β
Model files found: {all_files}\")\n",
" print(f\"β
Model weights format: {found_model_files[0]}\")\n",
" return True\n",
"\n",
"def test_model_loading(model_dir):\n",
" \\\"\\\"\\\"Test model loading to verify it works.\\\"\\\"\\\"\n",
" try:\n",
" print(\"π§ͺ Model loading test...\")\n",
" \n",
" # Load model and tokenizer\n",
" model = BertForSequenceClassification.from_pretrained(model_dir)\n",
" tokenizer = BertTokenizer.from_pretrained(model_dir)\n",
" \n",
" print(f\"β
Model loaded: {model.config.num_labels} classes, {model.config.hidden_size} hidden\")\n",
" print(f\"β
Tokenizer loaded: {len(tokenizer)} tokens\")\n",
" \n",
" # Quick inference test\n",
" text = \"A method for producing synthetic materials\"\n",
" inputs = tokenizer(text, return_tensors=\"pt\", max_length=512, truncation=True, padding=True)\n",
" \n",
" import torch\n",
" with torch.no_grad():\n",
" outputs = model(**inputs)\n",
" predictions = outputs.logits.softmax(dim=-1)\n",
" \n",
" print(f\"β
Inference test successful: shape {predictions.shape}\")\n",
" return True\n",
" \n",
" except Exception as e:\n",
" print(f\"β Test error: {e}\")\n",
" return False\n",
"\n",
"def upload_to_huggingface(model_dir, repo_name, token, private=False):\n",
" \\\"\\\"\\\"Upload model to Hugging Face Hub with support for all formats.\\\"\\\"\\\"\n",
" \n",
" print(\"π Upload to Hugging Face Hub\")\n",
" print(f\"π Model: {model_dir}\")\n",
" print(f\"π·οΈ Repository: {repo_name}\")\n",
" print(f\"π Private: {private}\")\n",
" \n",
" # File verification\n",
" if not check_model_files(model_dir):\n",
" return False\n",
" \n",
" # Loading test\n",
" if not test_model_loading(model_dir):\n",
" print(\"β οΈ Warning: Model doesn't load correctly, but continuing upload...\")\n",
" \n",
" try:\n",
" # Initialize API\n",
" api = HfApi(token=token)\n",
" \n",
" # Check connection\n",
" user_info = api.whoami()\n",
" print(f\"β
Connected as: {user_info['name']}\")\n",
" \n",
" # Create or verify repository\n",
" try:\n",
" create_repo(repo_name, token=token, private=private, exist_ok=True)\n",
" print(f\"β
Repository created/verified: https://huggingface.co/{repo_name}\")\n",
" except Exception as e:\n",
" print(f\"β οΈ Repository warning: {e}\")\n",
" \n",
" # Upload complete folder\n",
" print(\"π€ Uploading files...\")\n",
" \n",
" # Determine model format\n",
" model_format = \"SafeTensors\" if os.path.exists(os.path.join(model_dir, 'model.safetensors')) else \"PyTorch\"\n",
" \n",
" # Create informative commit message\n",
" commit_message = f\\\"\\\"\\\"Upload PatentBERT PyTorch model\n",
"\n",
"BERT model fine-tuned for patent classification, converted from TensorFlow to PyTorch.\n",
"\n",
"Specifications:\n",
"- Format: {model_format}\n",
"- Classes: Auto-detected from config.json \n",
"- Conversion: TensorFlow 1.15 β PyTorch via transformers\n",
"- CPC Labels: Real Cooperative Patent Classification labels included\n",
"\n",
"Included files:\n",
"{', '.join(sorted(os.listdir(model_dir)))}\n",
"\\\"\\\"\\\"\n",
" \n",
" upload_folder(\n",
" folder_path=model_dir,\n",
" repo_id=repo_name,\n",
" token=token,\n",
" commit_message=commit_message,\n",
" ignore_patterns=[\".git\", \".gitattributes\", \"*.tmp\"]\n",
" )\n",
" \n",
" print(\"π Upload completed successfully!\")\n",
" print(f\"π Model available at: https://huggingface.co/{repo_name}\")\n",
" \n",
" # Usage instructions\n",
" print(\"\\\\nπ Usage instructions:\")\n",
" print(f\"from transformers import BertForSequenceClassification, BertTokenizer\")\n",
" print(f\"model = BertForSequenceClassification.from_pretrained('{repo_name}')\")\n",
" print(f\"tokenizer = BertTokenizer.from_pretrained('{repo_name}')\")\n",
" \n",
" return True\n",
" \n",
" except Exception as e:\n",
" print(f\"β Upload error: {e}\")\n",
" import traceback\n",
" traceback.print_exc()\n",
" return False\n",
"\n",
"def main():\n",
" if len(sys.argv) != 4:\n",
" print(\"Usage: python upload_to_hf.py <model_dir> <repo_name> <hf_token>\")\n",
" print(\"Example: python upload_to_hf.py ./pytorch_model ZoeYou/patentbert-pytorch hf_xxx...\")\n",
" sys.exit(1)\n",
" \n",
" model_dir = sys.argv[1]\n",
" repo_name = sys.argv[2]\n",
" token = sys.argv[3]\n",
" \n",
" if not os.path.exists(model_dir):\n",
" print(f\"β Directory not found: {model_dir}\")\n",
" sys.exit(1)\n",
" \n",
" success = upload_to_huggingface(model_dir, repo_name, token, private=False)\n",
" \n",
" if success:\n",
" print(\"\\\\nβ
UPLOAD SUCCESSFUL!\")\n",
" else:\n",
" print(\"\\\\nβ UPLOAD FAILED!\")\n",
" sys.exit(1)\n",
"\n",
"if __name__ == \"__main__\":\n",
" # Import torch for loading test\n",
" try:\n",
" import torch\n",
" except ImportError:\n",
" print(\"β οΈ torch not available, loading test skipped\")\n",
" \n",
" main()\n",
"\"\"\"\n",
"\n",
"# Save the corrected upload script\n",
"with open('/tmp/upload_to_hf_corrected.py', 'w', encoding='utf-8') as f:\n",
" f.write(corrected_upload_script)\n",
"\n",
"# Also overwrite the original script\n",
"with open('/tmp/upload_to_hf.py', 'w', encoding='utf-8') as f:\n",
" f.write(corrected_upload_script)\n",
"\n",
"print(\"β
CORRECTED upload script created!\")\n",
"print(\"\\nπ§ Key corrections:\")\n",
"print(\" β
Accepts BOTH model.safetensors AND pytorch_model.bin\")\n",
"print(\" β
Automatically detects model format\")\n",
"print(\" β
Improved error messages\")\n",
"print(\" β
Better commit message with format info\")\n",
"print(\" β
Proper torch import for testing\")\n",
"\n",
"print(\"\\nπ NOW RUN THIS CORRECTED COMMAND:\")\n",
"print(\" python /tmp/upload_to_hf.py patentbert_conversion/pytorch_model ZoeYou/patentbert-pytorch xxxxx\")\n",
"\n",
"print(\"\\nπ‘ Or use the new corrected script:\")\n",
"print(\" python /tmp/upload_to_hf_corrected.py patentbert_conversion/pytorch_model ZoeYou/patentbert-pytorch xxxxx\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# π UPLOAD SUCCESS! Let's test the uploaded model\n",
"\n",
"print(\"π Upload successful! Testing the uploaded model from Hugging Face...\")\n",
"\n",
"# Test the uploaded model\n",
"\n",
"from transformers import BertForSequenceClassification, BertTokenizer\n",
"import torch\n",
"\n",
"print(\"π Testing uploaded PatentBERT model from Hugging Face...\")\n",
"\n",
"try:\n",
" # Load model and tokenizer from Hugging Face Hub\n",
" model = BertForSequenceClassification.from_pretrained('ZoeYou/patentbert-pytorch')\n",
" tokenizer = BertTokenizer.from_pretrained('ZoeYou/patentbert-pytorch')\n",
" \n",
" print(f\"β
Model loaded: {model.config.num_labels} classes\")\n",
" print(f\"β
Tokenizer loaded: {len(tokenizer)} tokens\")\n",
" \n",
" # Test inference\n",
" text = \"A method for producing synthetic materials with enhanced properties\"\n",
" inputs = tokenizer(text, return_tensors=\"pt\", max_length=512, truncation=True, padding=True)\n",
" \n",
" with torch.no_grad():\n",
" outputs = model(**inputs)\n",
" predictions = outputs.logits.softmax(dim=-1)\n",
" \n",
" # Get top prediction\n",
" predicted_class_id = predictions.argmax().item()\n",
" confidence = predictions.max().item()\n",
" \n",
" # Use real CPC labels if available\n",
" if hasattr(model.config, 'id2label') and model.config.id2label:\n",
" predicted_label = model.config.id2label[predicted_class_id]\n",
" print(f\"β
Predicted CPC class: {predicted_label} (ID: {predicted_class_id})\")\n",
" else:\n",
" print(f\"β
Predicted class ID: {predicted_class_id}\")\n",
" \n",
" print(f\"β
Confidence: {confidence:.2%}\")\n",
" print(\"π Model works perfectly from Hugging Face!\")\n",
" \n",
"except Exception as e:\n",
" print(f\"β Error: {e}\")\n",
"\n",
"\n",
"print(\"π Model test code ready. Your model is now live at:\")\n",
"print(\"π https://huggingface.co/ZoeYou/patentbert-pytorch\")\n",
"\n",
"print(\"\\\\nπ Quick usage example:\")\n"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"π CONVERSION SUCCESSFUL! Upload script correction...\n",
"β
CORRECTED upload script created!\n",
"\n",
"π§ Applied corrections:\n",
" β
Accepts model.safetensors AND pytorch_model.bin\n",
" β
Model loading test before upload\n",
" β
Robust file verification\n",
" β
Informative commit message\n",
" β
Usage instructions included\n",
"\n",
"π CORRECTED COMMAND:\n",
" python upload_to_hf.py patentbert_conversion/pytorch_model ZoeYou/patentbert-pytorch xxxxx\n"
]
}
],
"source": [
"# step 4: Provide usage example for the uploaded model\n",
"\n",
"# π CONVERSION SUCCESS! Upload script correction\n",
"\n",
"print(\"π CONVERSION SUCCESSFUL! Upload script correction...\")\n",
"\n",
"upload_script = \"\"\"#!/usr/bin/env python3\n",
"import os\n",
"import sys\n",
"from huggingface_hub import HfApi, create_repo, upload_folder\n",
"from transformers import BertForSequenceClassification, BertTokenizer\n",
"\n",
"def check_model_files(model_dir):\n",
" \\\"\\\"\\\"Check for required model files.\\\"\\\"\\\"\n",
" \n",
" # Required base files\n",
" required_base = ['config.json', 'vocab.txt', 'tokenizer_config.json']\n",
" \n",
" # Model files (at least one of these)\n",
" model_files = ['model.safetensors', 'pytorch_model.bin']\n",
" \n",
" missing_base = []\n",
" for file in required_base:\n",
" if not os.path.exists(os.path.join(model_dir, file)):\n",
" missing_base.append(file)\n",
" \n",
" # Check for at least one model file\n",
" has_model_file = any(os.path.exists(os.path.join(model_dir, f)) for f in model_files)\n",
" \n",
" if missing_base:\n",
" print(f\"β Missing required files: {missing_base}\")\n",
" return False\n",
" \n",
" if not has_model_file:\n",
" print(f\"β No model file found. Expected: {model_files}\")\n",
" return False\n",
" \n",
" # Show found files\n",
" found_files = []\n",
" for file in os.listdir(model_dir):\n",
" if os.path.isfile(os.path.join(model_dir, file)):\n",
" found_files.append(file)\n",
" \n",
" print(f\"β
Model files found: {found_files}\")\n",
" return True\n",
"\n",
"def test_model_loading(model_dir):\n",
" \\\"\\\"\\\"Test model loading to verify it works.\\\"\\\"\\\"\n",
" try:\n",
" print(\"π§ͺ Model loading test...\")\n",
" \n",
" # Load model and tokenizer\n",
" model = BertForSequenceClassification.from_pretrained(model_dir)\n",
" tokenizer = BertTokenizer.from_pretrained(model_dir)\n",
" \n",
" print(f\"β
Model loaded: {model.config.num_labels} classes, {model.config.hidden_size} hidden\")\n",
" print(f\"β
Tokenizer loaded: {len(tokenizer)} tokens\")\n",
" \n",
" # Quick inference test\n",
" text = \"A method for producing synthetic materials\"\n",
" inputs = tokenizer(text, return_tensors=\"pt\", max_length=512, truncation=True, padding=True)\n",
" \n",
" with torch.no_grad():\n",
" outputs = model(**inputs)\n",
" predictions = outputs.logits.softmax(dim=-1)\n",
" \n",
" print(f\"β
Inference test successful: shape {predictions.shape}\")\n",
" return True\n",
" \n",
" except Exception as e:\n",
" print(f\"β Test error: {e}\")\n",
" return False\n",
"\n",
"def upload_to_huggingface(model_dir, repo_name, token, private=False):\n",
" \\\"\\\"\\\"Upload model to Hugging Face Hub.\\\"\\\"\\\"\n",
" \n",
" print(\"π Upload to Hugging Face Hub\")\n",
" print(f\"π Model: {model_dir}\")\n",
" print(f\"π·οΈ Repository: {repo_name}\")\n",
" print(f\"π Private: {private}\")\n",
" \n",
" # File verification\n",
" if not check_model_files(model_dir):\n",
" return False\n",
" \n",
" # Loading test\n",
" if not test_model_loading(model_dir):\n",
" print(\"β οΈ Warning: Model doesn't load correctly, but continuing upload...\")\n",
" \n",
" try:\n",
" # Initialize API\n",
" api = HfApi(token=token)\n",
" \n",
" # Check connection\n",
" user_info = api.whoami()\n",
" print(f\"β
Connected as: {user_info['name']}\")\n",
" \n",
" # Create or verify repository\n",
" try:\n",
" create_repo(repo_name, token=token, private=private, exist_ok=True)\n",
" print(f\"β
Repository created/verified: https://huggingface.co/{repo_name}\")\n",
" except Exception as e:\n",
" print(f\"β οΈ Repository warning: {e}\")\n",
" \n",
" # Upload complete folder\n",
" print(\"π€ Uploading files...\")\n",
" \n",
" # Create informative commit message\n",
" commit_message = f\\\"\\\"\\\"Upload PatentBERT PyTorch model\n",
"\n",
"BERT model fine-tuned for patent classification, converted from TensorFlow to PyTorch.\n",
"\n",
"Specifications:\n",
"- Format: {'SafeTensors' if os.path.exists(os.path.join(model_dir, 'model.safetensors')) else 'PyTorch'}\n",
"- Classes: Auto-detected from config.json\n",
"- Conversion: TensorFlow 1.15 β PyTorch via transformers\n",
"\n",
"Included files:\n",
"{', '.join(os.listdir(model_dir))}\n",
"\\\"\\\"\\\"\n",
" \n",
" upload_folder(\n",
" folder_path=model_dir,\n",
" repo_id=repo_name,\n",
" token=token,\n",
" commit_message=commit_message,\n",
" ignore_patterns=[\".git\", \".gitattributes\", \"*.tmp\"]\n",
" )\n",
" \n",
" print(\"π Upload completed successfully!\")\n",
" print(f\"π Model available at: https://huggingface.co/{repo_name}\")\n",
" \n",
" # Usage instructions\n",
" print(\"\\\\nπ Usage instructions:\")\n",
" print(f\"from transformers import BertForSequenceClassification, BertTokenizer\")\n",
" print(f\"model = BertForSequenceClassification.from_pretrained('{repo_name}')\")\n",
" print(f\"tokenizer = BertTokenizer.from_pretrained('{repo_name}')\")\n",
" \n",
" return True\n",
" \n",
" except Exception as e:\n",
" print(f\"β Upload error: {e}\")\n",
" return False\n",
"\n",
"def main():\n",
" if len(sys.argv) != 4:\n",
" print(\"Usage: python upload_to_hf.py <model_dir> <repo_name> <hf_token>\")\n",
" print(\"Example: python upload_to_hf.py ./pytorch_model ZoeYou/patentbert-pytorch hf_xxx...\")\n",
" sys.exit(1)\n",
" \n",
" model_dir = sys.argv[1]\n",
" repo_name = sys.argv[2]\n",
" token = sys.argv[3]\n",
" \n",
" if not os.path.exists(model_dir):\n",
" print(f\"β Directory not found: {model_dir}\")\n",
" sys.exit(1)\n",
" \n",
" success = upload_to_huggingface(model_dir, repo_name, token, private=False)\n",
" \n",
" if success:\n",
" print(\"\\\\nβ
UPLOAD SUCCESSFUL!\")\n",
" else:\n",
" print(\"\\\\nβ UPLOAD FAILED!\")\n",
" sys.exit(1)\n",
"\n",
"if __name__ == \"__main__\":\n",
" # Import torch for loading test\n",
" try:\n",
" import torch\n",
" except ImportError:\n",
" print(\"β οΈ torch not available, loading test skipped\")\n",
" \n",
" main()\n",
"\"\"\"\n",
"\n",
"# Save corrected upload script\n",
"with open('/tmp/upload_to_hf.py', 'w', encoding='utf-8') as f:\n",
" f.write(upload_script)\n",
"\n",
"print(\"β
CORRECTED upload script created!\")\n",
"print(\"\\nπ§ Applied corrections:\")\n",
"print(\" β
Accepts model.safetensors AND pytorch_model.bin\")\n",
"print(\" β
Model loading test before upload\")\n",
"print(\" β
Robust file verification\")\n",
"print(\" β
Informative commit message\")\n",
"print(\" β
Usage instructions included\")\n",
"\n",
"print(\"\\nπ CORRECTED COMMAND:\")\n",
"print(\" python upload_to_hf.py patentbert_conversion/pytorch_model ZoeYou/patentbert-pytorch xxxxx\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"π― COMPLETE TENSORFLOW β PYTORCH CONVERSION GUIDE\n",
"\n",
"π 4-step process:\n",
"\n",
"1οΈβ£ **DOWNLOAD** (in this notebook)\n",
" β’ Run previous cells to download PatentBERT\n",
" β’ Model will be in ./\n",
"\n",
"2οΈβ£ **EXTRACTION** (in this notebook)\n",
" β’ Run TensorFlow weight extraction cell\n",
" β’ Weights will be extracted to /tmp/patentbert_conversion/tf_weights/\n",
"\n",
"3οΈβ£ **CONVERSION** (Python 3.8+ environment)\n",
" ```\n",
" bash /tmp/install_pytorch_env.sh\n",
" source patentbert_pytorch/bin/activate\n",
" python /tmp/convert_patentbert.py /tmp/patentbert_conversion/tf_weights /tmp/patentbert_conversion/pytorch_model\n",
" ```\n",
"\n",
"4οΈβ£ **TEST AND UPLOAD**\n",
"\n",
" `python /tmp/test_patentbert.py /tmp/patentbert_conversion/pytorch_model`\n",
"\n",
" `python /tmp/upload_to_hf.py /tmp/patentbert_conversion/pytorch_model username/patentbert-pytorch your_hf_token`\n",
"\n",
"π RESULT:\n",
"β’ PyTorch model ready for production\n",
"β’ Compatible with Hugging Face Transformers\n",
"β’ Publicly available on Hub\n",
"β’ Documentation and examples included\n",
"\n",
"π‘ TIP:\n",
"First create an account at https://huggingface.co/ and get your access token\n",
"from https://huggingface.co/settings/tokens\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"π·οΈ Creating and adding CPC class labels...\n",
"β
Loaded 656 real CPC labels from PatentBERT\n",
"π Example labels from the real data:\n",
" 0: A01B - SOIL WORKING IN AGRICULTURE OR FORESTRY; PARTS, DETAILS, OR ACCESSORIES OF AGRIC...\n",
" 50: A46B - BRUSHES ...\n",
" 100: B07B - SEPERATING SOLIDS FROM SOLIDS BY SIEVING, SCREENING, OR SIFTING OR BY USING GAS ...\n",
" 200: B60Q - ARRANGEMENT OF SIGNALLING OR LIGHTING DEVICES, THE MOUNTING OR SUPPORTING THEREO...\n",
" 300: C10F - DRYING OR WORKING-UP OF PEAT...\n",
" 400: E04G - SCAFFOLDING; FORMS; SHUTTERING; BUILDING IMPLEMENTS OR OTHER BUILDING AIDS, OR T...\n",
" 500: F28B - STEAM OR VAPOUR CONDENSERS ...\n",
" 600: H01H - ELECTRIC SWITCHES; RELAYS; SELECTORS...\n",
" 655: Y10T - TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION...\n",
"\n",
"β
Real CPC system structure:\n",
" π Total classes: 656\n",
" π Distribution by section:\n",
" A: 84 classes\n",
" B: 171 classes\n",
" C: 88 classes\n",
" D: 40 classes\n",
" E: 31 classes\n",
" F: 101 classes\n",
" G: 81 classes\n",
" H: 51 classes\n",
" Y: 9 classes\n",
"β
Labels saved to: /tmp/patentbert_conversion/pytorch_model/labels.json\n",
"β
Configuration updated with real CPC labels\n",
"β
README updated with REAL CPC label documentation\n",
"\n",
"π Added/updated files:\n",
" β’ labels.json - Complete mapping of 656 REAL CPC labels\n",
" β’ config.json - Updated configuration with authentic id2label/label2id\n",
" β’ README.md - Complete documentation with real CPC distribution\n",
"\n",
"π― Model is now ready for upload with AUTHENTIC CPC labels!\n"
]
}
],
"source": [
"# π·οΈ ADDING CLASS LABELS - Essential for prediction interpretation\n",
"\n",
"print(\"π·οΈ Creating and adding CPC class labels...\")\n",
"\n",
"# Load the REAL CPC labels from the original PatentBERT label file\n",
"import pandas as pd\n",
"import json\n",
"import os\n",
"\n",
"# Load the real CPC labels\n",
"label_file_path = \"./labels_group_id.tsv\"\n",
"cpc_df = pd.read_csv(label_file_path, sep='\\t')\n",
"\n",
"print(f\"β
Loaded {len(cpc_df)} real CPC labels from PatentBERT\")\n",
"print(f\"π Example labels from the real data:\")\n",
"for i in [0, 50, 100, 200, 300, 400, 500, 600, 655]:\n",
" if i < len(cpc_df):\n",
" row = cpc_df.iloc[i]\n",
" print(f\" {i:3d}: {row['id']} - {row['title'][:80]}...\")\n",
"\n",
"# Extract labels and descriptions\n",
"cpc_labels = cpc_df['id'].tolist()\n",
"cpc_descriptions = [f\"{row['id']}: {row['title']}\" for _, row in cpc_df.iterrows()]\n",
"\n",
"print(f\"\\nβ
Real CPC system structure:\")\n",
"print(f\" π Total classes: {len(cpc_labels)}\")\n",
"\n",
"# Analyze the actual distribution by section\n",
"section_counts = {}\n",
"for label in cpc_labels:\n",
" section = label[0]\n",
" section_counts[section] = section_counts.get(section, 0) + 1\n",
"\n",
"print(f\" π Distribution by section:\")\n",
"for section, count in sorted(section_counts.items()):\n",
" print(f\" {section}: {count} classes\")\n",
"\n",
"# Create label configuration file\n",
"label_config = {\n",
" \"id2label\": {str(i): label for i, label in enumerate(cpc_labels)},\n",
" \"label2id\": {label: i for i, label in enumerate(cpc_labels)},\n",
" \"num_labels\": len(cpc_labels),\n",
" \"classification_type\": \"CPC\",\n",
" \"description\": \"Real Cooperative Patent Classification (CPC) labels from PatentBERT training data\"\n",
"}\n",
"\n",
"# Save to model directory\n",
"model_dir = \"/tmp/patentbert_conversion/pytorch_model\"\n",
"labels_file = os.path.join(model_dir, \"labels.json\")\n",
"\n",
"with open(labels_file, 'w', encoding='utf-8') as f:\n",
" json.dump(label_config, f, indent=2, ensure_ascii=False)\n",
"\n",
"print(f\"β
Labels saved to: {labels_file}\")\n",
"\n",
"# Update model configuration to include labels\n",
"config_file = os.path.join(model_dir, \"config.json\")\n",
"\n",
"if os.path.exists(config_file):\n",
" with open(config_file, 'r') as f:\n",
" config = json.load(f)\n",
" \n",
" # Add labels to config\n",
" config[\"id2label\"] = label_config[\"id2label\"]\n",
" config[\"label2id\"] = label_config[\"label2id\"]\n",
" \n",
" # Save updated config\n",
" with open(config_file, 'w', encoding='utf-8') as f:\n",
" json.dump(config, f, indent=2, ensure_ascii=False)\n",
" \n",
" print(\"β
Configuration updated with real CPC labels\")\n",
"else:\n",
" print(\"β οΈ config.json file not found\")\n",
"\n",
"# Create detailed README with REAL CPC labels and distribution\n",
"section_descriptions = {\n",
" 'A': 'Human Necessities - Agriculture, Food, Health, Sports',\n",
" 'B': 'Performing Operations; Transporting - Manufacturing, Transport',\n",
" 'C': 'Chemistry; Metallurgy - Chemical processes, Materials',\n",
" 'D': 'Textiles; Paper - Fibers, Fabrics, Paper-making',\n",
" 'E': 'Fixed Constructions - Building, Mining, Roads',\n",
" 'F': 'Mechanical Engineering; Lightning; Heating; Weapons; Blasting',\n",
" 'G': 'Physics - Optics, Acoustics, Computing, Measuring',\n",
" 'H': 'Electricity - Electronics, Power generation, Communication',\n",
" 'Y': 'General Tagging of New Technological Developments'\n",
"}\n",
"\n",
"readme_with_labels = f\"\"\"# PatentBERT - PyTorch\n",
"\n",
"BERT model specialized for patent classification using the **real CPC (Cooperative Patent Classification) system** from the original PatentBERT training data.\n",
"\n",
"## π Specifications\n",
"\n",
"- **Output classes**: {len(cpc_labels)} (real CPC labels)\n",
"- **Classification system**: CPC (Cooperative Patent Classification)\n",
"- **Architecture**: BERT-base (768 hidden, 12 layers, 12 attention heads)\n",
"- **Vocabulary**: 30,522 tokens\n",
"- **Format**: SafeTensors\n",
"\n",
"## π·οΈ CPC Classes (Real Distribution)\n",
"\n",
"The model predicts classes according to the authentic CPC system used in PatentBERT training:\n",
"\n",
"### Main Sections (Actual Counts)\n",
"\"\"\"\n",
"\n",
"# Add real distribution to README\n",
"for section in ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'Y']:\n",
" if section in section_counts:\n",
" count = section_counts[section]\n",
" desc = section_descriptions.get(section, f'Section {section}')\n",
" readme_with_labels += f\"- **{section} ({count} classes)**: {desc}\\n\"\n",
"\n",
"readme_with_labels += f\"\"\"\n",
"### Example Real Classes\n",
"\n",
"- `A01B`: SOIL WORKING IN AGRICULTURE OR FORESTRY\n",
"- `B25J`: MANIPULATORS; CHAMBERS PROVIDED WITH MANIPULATION DEVICES\n",
"- `C07D`: HETEROCYCLIC COMPOUNDS\n",
"- `G06F`: ELECTRIC DIGITAL DATA PROCESSING\n",
"- `H04L`: TRANSMISSION OF DIGITAL INFORMATION\n",
"\n",
"## π Usage\n",
"\n",
"```python\n",
"from transformers import BertForSequenceClassification, BertTokenizer\n",
"import json\n",
"import torch\n",
"\n",
"# Load model and tokenizer\n",
"model = BertForSequenceClassification.from_pretrained('ZoeYou/patentbert-pytorch')\n",
"tokenizer = BertTokenizer.from_pretrained('ZoeYou/patentbert-pytorch')\n",
"\n",
"# Inference example\n",
"text = \"A method for producing synthetic materials with enhanced thermal properties...\"\n",
"inputs = tokenizer(text, return_tensors=\"pt\", max_length=512, truncation=True, padding=True)\n",
"\n",
"with torch.no_grad():\n",
" outputs = model(**inputs)\n",
" predictions = outputs.logits.softmax(dim=-1)\n",
"\n",
"# Get prediction\n",
"predicted_class_id = predictions.argmax().item()\n",
"confidence = predictions.max().item()\n",
"\n",
"# Use model labels (real CPC codes)\n",
"predicted_label = model.config.id2label[predicted_class_id]\n",
"\n",
"\n",
"print(f\"Predicted CPC class: {{predicted_label}} (ID: {{predicted_class_id}})\")\n",
"print(f\"Confidence: {{confidence:.2%}}\")\n",
"```\n",
"\n",
"## π Included Files\n",
"\n",
"- `model.safetensors`: Model weights (420 MB)\n",
"- `config.json`: Configuration with integrated real CPC labels\n",
"- `vocab.txt`: Tokenizer vocabulary\n",
"- `tokenizer_config.json`: Tokenizer configuration\n",
"- `labels.json`: Complete real CPC label mapping ({len(cpc_labels)} authentic labels)\n",
"- `README.md`: This documentation\n",
"\n",
"## π¬ Performance\n",
"\n",
"This model was trained on a large patent corpus to automatically classify documents according to the real CPC system, using the exact same {len(cpc_labels)} CPC codes from the original PatentBERT training data.\n",
"\n",
"## π References\n",
"\n",
"- [Cooperative Patent Classification (CPC)](https://www.cooperativepatentclassification.org/)\n",
"- [Original PatentBERT Paper](https://arxiv.org/abs/2103.02557)\n",
"\n",
"## π Citation\n",
"\n",
"If you use this model, please cite the original PatentBERT work and mention this PyTorch conversion.\n",
"\"\"\"\n",
"\n",
"# Save updated README\n",
"readme_file = os.path.join(model_dir, \"README.md\")\n",
"with open(readme_file, 'w', encoding='utf-8') as f:\n",
" f.write(readme_with_labels)\n",
"\n",
"print(\"β
README updated with REAL CPC label documentation\")\n",
"\n",
"# Summary of created/updated files\n",
"print(\"\\nπ Added/updated files:\")\n",
"print(f\" β’ labels.json - Complete mapping of {len(cpc_labels)} REAL CPC labels\")\n",
"print(f\" β’ config.json - Updated configuration with authentic id2label/label2id\")\n",
"print(f\" β’ README.md - Complete documentation with real CPC distribution\")\n",
"\n",
"print(\"\\nπ― Model is now ready for upload with AUTHENTIC CPC labels!\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Predicted CPC class: A63B (ID: 76)\n",
"Confidence: 99.51%\n"
]
}
],
"source": [
"from transformers import BertForSequenceClassification, BertTokenizer\n",
"import torch\n",
"\n",
"# Load model and tokenizer\n",
"model = BertForSequenceClassification.from_pretrained('ZoeYou/patentbert-pytorch')\n",
"tokenizer = BertTokenizer.from_pretrained('ZoeYou/patentbert-pytorch')\n",
"\n",
"# Inference example\n",
"text = \"A device designed to spin in a user's hands may include a body with a centrally mounted ball bearing positioned within a center orifice of the body, wherein an outer race of the ball bearing is attached to the frame; a button made of a pair of bearing caps attached to one another through the ball bearing and clamped against an inner race of the ball bearing, such that when the button is held between a user's thumb and finger, the body freely rotates about the ball bearing; and a plurality of weights distributed at opposite ends of the body, creating at least a bipolar weight distribution.\"\n",
"inputs = tokenizer(text, return_tensors=\"pt\", max_length=512, truncation=True, padding=True)\n",
"\n",
"with torch.no_grad():\n",
" outputs = model(**inputs)\n",
" predictions = outputs.logits.softmax(dim=-1)\n",
"\n",
"# Get prediction\n",
"predicted_class_id = predictions.argmax().item()\n",
"confidence = predictions.max().item()\n",
"\n",
"# Use model labels (real CPC codes)\n",
"predicted_label = model.config.id2label[predicted_class_id]\n",
"\n",
"print(f\"Predicted CPC class: {predicted_label} (ID: {predicted_class_id})\")\n",
"print(f\"Confidence: {confidence:.2%}\")\n"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"'A63B'"
]
},
"execution_count": 7,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"model.config.id2label[76]"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"accelerator": "GPU",
"colab": {
"collapsed_sections": [],
"name": "PatentBERT",
"provenance": []
},
"kernelspec": {
"display_name": "simcse",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.9.23"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
|