#!/usr/bin/env python3 """ Run this script as ./conversion_script.py to convert the SCITE files to HF-compatible parquet files. """ import re from typing import Literal import pandas as pd Split = Literal["train", "test"] def convert_for_causality_detection(split: Split) -> None: df = pd.read_xml(f"{split}-corpus.xml") df["label"] = df["label"].apply(lambda x: 0 if x == "Non-Causal" else 1) df["text"] = df["sentence"].apply(lambda x: re.sub(r'', "", x)) df["index"] = df["id"].apply(lambda x: f"scite_{split}_{x}") df = df.set_index("index") df = df[["label", "text"]] df.to_parquet(f"./causality-detection/{split}.parquet", engine="pyarrow") def convert_for_causal_candidate_extraction(split: Split) -> None: def map_to_tokens(text: str): splits: list[str] = [] tags: list[set[int]] = [] curtags: set[int] = set() for match in re.finditer(r"(.*?)<(/?)e(\d+)>", text): splits.append(match[1]) tags.append(list(curtags)) if match[2] == "": curtags.add(int(match[3])) else: curtags.remove(int(match[3])) return pd.Series((splits, tags)) df = pd.read_xml(f"{split}-corpus.xml") df[["tokens", "entity"]] = df["sentence"].apply(map_to_tokens) df["index"] = df["id"].apply(lambda x: f"scite_{split}_{x}") df = df[["index", "tokens", "entity"]].set_index("index") print(df) df.to_parquet(f"./causal-candidate-extraction/{split}.parquet", engine="pyarrow") def convert_for_causality_identification(split: Split) -> None: def map_label(label: str): if label == "Non-Causal": return [] tmp = list() for t in label[len("Cause-Effect("):-1].split("),("): left, right = t.strip('()').split(',') tmp.append({"relationship": 1, "first": left, "second": right}) return tmp df = pd.read_xml(f"{split}-corpus.xml", dtype_backend="pyarrow") df["relations"] = df["label"].apply(map_label) df["text"] = df["sentence"] df["index"] = df["id"].apply(lambda x: f"scite_{split}_{x}") df = df.set_index("index") df = df[["text", "relations"]] df.to_parquet(f"./causality-identification/{split}.parquet", engine="pyarrow") convert_for_causality_detection("test") convert_for_causality_detection("train") convert_for_causal_candidate_extraction("test") convert_for_causal_candidate_extraction("train") convert_for_causality_identification("test") convert_for_causality_identification("train")