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SYSTEM: |
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NUM_GPUS: 1 |
|
|
NUM_CPUS: 1 |
|
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MODEL: |
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ARCHITECTURE: unet_plus_3d |
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BLOCK_TYPE: residual_se |
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INPUT_SIZE: [17, 257, 257] |
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OUTPUT_SIZE: [17, 257, 257] |
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IN_PLANES: 1 |
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OUT_PLANES: 3 |
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TARGET_OPT: ["1"] |
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NORM_MODE: gn |
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FILTERS: [32, 64, 96, 128, 192] |
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DATASET: |
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IMAGE_NAME: |
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- w08_tr5_tc4.h5 |
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LABEL_NAME: |
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- w08_tr5_tc4_label_v3.1_polarity.h5 |
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INPUT_PATH: /data/projects/weilab/dataset/h01/syn/ |
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OUTPUT_PATH: outputs/JWR15_Synapse/syn |
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PAD_SIZE: [4, 48, 48] |
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DISTRIBUTED: True |
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REJECT_SAMPLING: |
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SIZE_THRES: 2000 |
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P: 0.95 |
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DATA_CHUNK_NUM: [20, 7, 8] |
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SOLVER: |
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LR_SCHEDULER_NAME: WarmupCosineLR |
|
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BASE_LR: 0.04 |
|
|
ITERATION_STEP: 1 |
|
|
ITERATION_SAVE: 5000 |
|
|
ITERATION_TOTAL: 200000 |
|
|
SAMPLES_PER_BATCH: 2 |
|
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INFERENCE: |
|
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INPUT_SIZE: [33, 257, 257] |
|
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OUTPUT_SIZE: [33, 257, 257] |
|
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OUTPUT_ACT: ["sigmoid"] |
|
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IS_ABSOLUTE_PATH: False |
|
|
DO_CHUNK_TITLE: 1 |
|
|
INPUT_PATH: /n/boslfs02/LABS/lichtman_lab/donglai/xiaomeng/alzheimer/test/ |
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OUTPUT_PATH: /n/boslfs02/LABS/lichtman_lab/donglai/xiaomeng/alzheimer/result/ |
|
|
PAD_SIZE: [8, 128, 128] |
|
|
AUG_MODE: mean |
|
|
AUG_NUM: None |
|
|
STRIDE: [16, 128, 128] |
|
|
SAMPLES_PER_BATCH: 16 |
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|
