Upload 6 files

examples/biomass_models_comparison.csv

@@ -0,0 +1,7 @@
+Model,R2,RMSE,AIC,BIC,mu_max,Ks,Xmax,lambda,t_lag,CI_lower_mu,CI_upper_mu
+Monod,0.9854,0.0234,-45.23,-42.15,0.452,2.13,,,,,0.441,0.463
+Logistic,0.9761,0.0312,-42.17,-39.54,0.423,,15.3,,,,0.412,0.434
+Gompertz,0.9923,0.0187,-48.52,-45.23,0.481,,,12.4,3.2,,0.469,0.493
+Baranyi,0.9889,0.0205,-46.78,-43.12,0.456,1.87,,,,3.5,0.445,0.467
+Andrews,0.9798,0.0287,-43.21,-40.32,0.438,1.95,,,,,0.426,0.450
+Verhulst,0.9734,0.0328,-41.56,-38.91,0.419,,14.8,,,,0.407,0.431

examples/kinetic_parameters.csv

@@ -0,0 +1,41 @@
+Experimento,Modelo,Biomass_Ks,Biomass_X0,Biomass_Xm,Biomass_Xo,Biomass_lag,Biomass_um,Product_Po,Product_alpha,Product_beta,Substrate_So,Substrate_p,Substrate_q,R2_Biomass,R2_Product,R2_Substrate,RMSE_Biomass,RMSE_Product,RMSE_Substrate
+Hoja 'PROMEDIO',Logístico,,,33.560161194071135,1.0000000000000003e-09,,12.351225718398947,0.030881172529520464,0.00017106822246314239,0.0001200311249924772,2.8140526249276623,0.05388311920863542,0.006564338186350466,0.7660587323753415,0.4732999125873586,0.49734498935146343,6.284701706961407,0.008451460159209603,1.5218679889361526
+Hoja 'PROMEDIO',Gompertz,,,29.587451897408467,,0.6718743108227457,37.12905347061325,0.030105844559722494,3.319700380905361e-05,0.00016091353901775192,4.638071810092133,0.11220455526174412,0.00864883990523625,0.8300268604970092,0.48445690919223294,0.8373562388281135,5.356996937597914,0.008361468129550157,0.865686566991867
+Hoja 'PROMEDIO',Moser,-3.8490521758711144e-19,,52.569369452397446,,,0.2596561758831163,0.029395847176367822,0.00029900814303255365,7.420157081535331e-05,4.826308118916354,0.1872546622326717,-0.019246329317260197,0.996868217375698,0.4874464589785207,0.8825290407226263,0.7271551011595623,0.008337189490605457,0.735710969961049
+Hoja 'PROMEDIO',Baranyi,,1.0000000000000007e-09,38.94944189860444,,2.9254084223601775,24.361519810462088,0.03494432109107769,0.0016763070707722753,-0.0007484886083741064,1.0213119472629428,0.018978896881585695,0.0008445312088678544,-0.3539980933638085,0.8520151194640497,-0.10860838204915435,15.119599118509132,0.0044798010417793285,2.2601176822726408
+Hoja 'CN 20_1',Logístico,,,14.831924053843698,2.446408442908677e-07,,935.6188642874816,3.2131587638594284e-19,0.0003867410446516831,2.809207897806742e-06,5.5000000021168365,0.3229961233416814,0.008652832780060694,-0.30753928178550427,0.7216663206104421,0.9803591698329991,28.485597717207202,0.0014241586394662994,0.2646215423631816
+Hoja 'CN 20_1',Gompertz,,,60.05551730117387,,1.5481725488789102,33.38931956361087,1.2191384997398767e-13,0.00018304266162891134,-3.097089656508269e-05,5.4999999999997335,0.11440942939030081,-0.007872482661581925,0.9971225189926456,-0.1629485623713769,-0.36680684796047425,1.3363007037261196,0.0029110907313529754,2.207490530557393
+Hoja 'CN 20_1',Moser,8.308860064139903e-18,,292.3620853919888,,,0.03543821146031211,2.285502973192463e-13,0.0004424421903421565,-0.00010690147227804237,5.5,0.27858962572873636,-0.0537094221418131,0.7726649218230427,0.7115422464094434,0.760010602603705,11.877668245470794,0.0014498283808902657,0.9249990865558546
+Hoja 'CN 20_1',Baranyi,,6.153649110246695e-08,58.472417073064896,,1.2688415743864938,58.58732352116509,2.807122670172707e-13,0.00011543904544611596,-4.275520218932382e-06,5.500000000119389,0.08508855265917552,0.0019401360491909186,0.4543742863146263,0.20108005089818515,0.08462136582260693,18.401167508194977,0.0024128322069163185,1.8065320128259552
+Hoja 'CN 20_2',Logístico,,,22.59568679830699,2.446408445990765e-07,,1252.5574935434202,0.035999999792650186,-0.0006709248009360396,0.0009288980557912945,5.533000002800199,0.18176927379453683,0.011433425975873887,0.2391830970061083,0.5669814367952256,0.9989368524802135,11.094842401152707,0.03794762104027253,0.060400234263588586
+Hoja 'CN 20_2',Gompertz,,,43.80295816094708,,2.2160231216126682,16.574472289399022,0.03258511779376969,0.01127855062443872,-0.00413128359190918,2.4725602910973725,0.14979973622498835,-0.041266905677019315,0.8500947065867956,0.825015689026171,0.3373162356435099,4.924810744266342,0.024122974260939355,1.5079780608595024
+Hoja 'CN 20_2',Moser,3.919816481789109e-18,,195.7114048415544,,,0.036899105715696524,0.01005748019491,0.005937983157692939,-0.0007976105602808896,4.795616127625743,0.4390894696338603,-0.09833700019830813,0.8934490253431672,0.548202012378136,0.8586468039821201,4.152023229240954,0.03876175602280908,0.6964575873926112
+Hoja 'CN 20_2',Baranyi,,6.153649106032975e-08,33.85436188392182,,4.3849464033953005,74.2858212891132,4.17680385252852e-23,-466255.01791205164,466255.01647008525,4.888731970776164,-17625728.13792759,17625728.086067583,0.009582930275159884,0.6466371636806894,0.6682069851885807,12.658729498148183,0.03428007265080399,1.0670271677060217
+Hoja 'CN 20_3',Logístico,,,40.18558638735518,1.0000000000000003e-09,,6.348536431189665,0.03799056875359609,0.0030666289654508495,-0.001454394034423211,2.0092351997120326,0.06684979213616396,-0.012842114592725532,0.573389052451612,0.8006221502704793,0.17895088878081522,8.77899377101079,0.008683595213991235,1.6770702187221538
+Hoja 'CN 20_3',Gompertz,,,45.1434819336462,,2.1141653055233562,18.011078251171238,0.03003907671784331,0.003385070636007417,-0.0011701271854814366,2.553783799422318,0.13101383137238667,-0.03355305789679109,0.8560390994445504,0.9614369596293375,0.3015995223249506,5.099775054449827,0.0038189744267971308,1.5467457915824154
+Hoja 'CN 20_3',Moser,-3.581396806212538e-19,,200.816492903685,,,0.0442024684695258,0.024076481358278706,0.0017980218747157448,-0.00025533601816154626,4.710421929554866,0.3426662159400019,-0.07726634693101361,0.8954950064627706,0.6772662543858788,0.8214197856380085,4.3450748707768625,0.011047990849454127,0.7821379327503214
+Hoja 'CN 20_3',Baranyi,,1.0000000000000003e-09,39.68746287417467,,2.73533727846307,90.98362536286965,0.03214901134609407,0.0021501055377571446,-0.0005977144684023761,2.3651436591605552,0.06423262378194432,-0.005039765969062966,0.7184449556067352,0.9837372502959655,0.2567237183075459,7.131984640667968,0.002480036688599632,1.5956653574327848
+Hoja 'CN 30_1',Logístico,,,27.788328346683798,2.4464084430285667e-07,,390.4797113725419,0.03099999998700935,-3.742898510041449e-05,5.4051796541298254e-05,8.285666668077562,0.19104683278887363,0.021828671400912915,0.4057352328853274,0.4464319008297746,0.9925364669968437,13.525882479756971,0.002808315664176618,0.24030369450062153
+Hoja 'CN 30_1',Gompertz,,,43.89825559996348,,0.7560873301276396,49.98717740799721,0.031730518256081815,-5.020650774459446e-05,4.58890893069408e-05,6.555019439249649,0.12353927535733623,0.004317934081773449,0.9456827864140489,0.45621365170585126,0.8205129329685015,4.0892565687611295,0.002783393093018805,1.1784327389797866
+Hoja 'CN 30_1',Moser,-2.4529668240070282e-18,,75.30440139178677,,,0.21734831891646483,0.031546154348256944,-4.817695668277899e-05,5.290115539300078e-05,7.62524298815014,0.2983915577968117,-0.045985240922333956,0.961174817883273,0.45700791889852743,0.9463617305002815,3.4572626092383487,0.002781359605338926,0.6442072350561407
+Hoja 'CN 30_1',Baranyi,,4.887819463900031e-07,28.2565383698246,,0.0005582333038217472,683.0328260747106,0.0309999999739898,-3.680878820219571e-05,5.315615983615646e-05,8.285666677280629,0.1878811939704638,0.02146697096312289,0.4251504074842667,0.4464319008293426,0.992536467002059,13.303096222928344,0.0028083156641777133,0.24030369441666208
+Hoja 'CN 30_2',Logístico,,,34.90691617474188,1.0000000000000003e-09,,12.641070267019067,0.032897547870288875,0.0004231205820925905,-0.0001063616557687086,5.065777756300485,0.12014442356701316,0.005593982304115474,0.841724132786902,0.9252097252785391,0.6118466313526627,5.28758205038857,0.0010576058380190943,1.7535151682903354
+Hoja 'CN 30_2',Gompertz,,,33.89401043591097,,0.7146239490488031,40.71815419431643,0.030747683230479963,0.00048264950734231744,-8.661522113430422e-05,6.654995409843342,0.18126542341331164,0.0014880336352582246,0.9312989289006405,0.9797940680162862,0.8177533077963965,3.4836259963620084,0.0005497189630476731,1.2015384538600964
+Hoja 'CN 30_2',Moser,1.2897837753240133e-17,,47.486019951435495,,,0.3223979344755756,0.030332787744083402,0.000717482811114339,-0.00016986650108446105,7.660214602037961,0.36379031207510504,-0.0485632238157028,0.9878476120449072,0.8348838607604334,0.9375036287846175,1.4651449129490908,0.0015714336109159002,0.7036152566443072
+Hoja 'CN 30_2',Baranyi,,6.153652644064945e-08,26.416010591716976,,2.5047275116291003,117.16482247038536,0.035875021974219753,0.000307001012918189,-0.00012394536288692245,4.032403101751188,0.10330198885302645,0.016257558124013465,0.05364922688895091,0.2781099959988288,0.41422380644010814,12.929324615208852,0.003285767195015456,2.1541389127883526
+Hoja 'CN 30_3',Logístico,,,28.420379273949397,1.0000000000000003e-09,,12.381793420722515,0.06389461782909225,-4.337789816600407e-05,-0.0001709016384573465,4.260579708198818,0.13598986722073433,-0.002739750754713337,0.6331629420101192,0.028371312099348178,0.5099556104828588,6.853118913008835,0.015364172268503708,1.8926454740202037
+Hoja 'CN 30_3',Gompertz,,,26.778914281323438,,0.6295814051881274,36.34988790431447,0.05430108931526329,0.000865856815972319,-0.00027840224615896384,6.858865551852918,0.23050067429336882,-0.00023686273549287503,0.8053513307263892,0.16248576443793006,0.8755892588171398,4.992032294447232,0.014264452338379517,0.9536313034525858
+Hoja 'CN 30_3',Moser,1.560379164690159e-17,,47.70769107312535,,,0.24651068487393862,0.05022605165501698,0.0017008127594184688,-0.0005477153537713612,7.14589713401879,0.42413004838108226,-0.0690546224116537,0.9711135332310729,0.2567257043671176,0.9049112845788494,1.9230867652033092,0.013437966696464996,0.8337119952827011
+Hoja 'CN 30_3',Baranyi,,1.576424376050108e-08,26.162106182684056,,2.469966773697698,71.67840003126416,0.06056651774613083,0.0003256477648074899,-0.00031668125526535906,2.943719464794486,0.06514530519628049,0.008887702056968226,0.13049284194428723,0.0329842645124967,0.2747555754094313,10.550869405121796,0.015327657024476455,2.302468828288633
+Hoja 'CN 40_1',Logístico,,,22.247418896330778,1.0000000000000003e-09,,12.603121394429602,0.032597848149181964,0.0002801953799843583,0.00010005220815650733,4.363597825464099,0.14836912930328708,0.009881746118754307,0.5066157182496023,0.5215259785246144,0.8667181596743357,5.6475516714543135,0.005907668313806214,0.6895837241644742
+Hoja 'CN 40_1',Gompertz,,,20.93013653066434,,0.562308831387529,32.401186177575234,0.03594577764608594,-0.0002845381318220943,0.00018842846788046604,5.588276907768003,0.16867260245543617,0.020456234434188855,0.9507627450866929,0.5168353861385755,0.9855440698146546,1.7840806147723867,0.005936554816097289,0.22710386910730304
+Hoja 'CN 40_1',Moser,-9.100284317246893e-18,,23.156233601335977,,,0.8376737075624656,0.03509398023326,-0.0001863629146604828,0.00017564742871967572,5.642887999650552,0.20009238535005258,0.009649784812819728,0.9922137693976872,0.4854779369521367,0.9900647301485608,0.7094653495791878,0.006126168297751622,0.188274431928936
+Hoja 'CN 40_1',Baranyi,,6.15386261637319e-08,22.727015211571263,,0.007663519068388587,107.48731622321752,0.03833333332231089,-0.00042902142621170696,0.00017430370766659395,5.5346666676571,0.10039517743785897,0.03020548216694343,0.7143181219436301,0.5703485723165356,0.9540809084333876,4.297430921763285,0.005598156715605536,0.4047605300920914
+Hoja 'CN 40_2',Logístico,,,28.53856048981483,1.0000000000000003e-09,,13.144660760961843,0.030744299047753103,0.0008467970077850721,-5.776512757196484e-05,3.9664718690500673,0.08111454910079602,0.015027002974494516,0.028374419726875377,0.4861577411353176,0.7761591772911338,10.243373944671474,0.009873083592581777,0.8916469811548343
+Hoja 'CN 40_2',Gompertz,,,27.835569064423517,,0.4342981896075453,57.41627772613334,0.028092656234487416,0.0004597625928658126,6.12841526896014e-05,5.54330453370828,0.10641672754599374,0.01969515452898054,0.9717828738778865,0.41629190308670017,0.9854498883544957,1.745620956221472,0.01052290776669136,0.22732984703770248
+Hoja 'CN 40_2',Moser,-1.2116630055256252e-17,,28.1199875603976,,,1.9892995513100413,0.027874187273519323,0.0004926753563593,5.4825115055560685e-05,5.5468586102358275,0.11018326461762117,0.018616282308686213,0.9747861521551496,0.4209141562042197,0.98694421543488,1.6501108547661238,0.010481160686223826,0.21534003752854236
+Hoja 'CN 40_2',Baranyi,,1.2257093889947472e-07,28.568284196181267,,3.311762896940351e-05,125.66570074709142,0.028666666658462566,0.0003596684290434019,7.284897212718502e-05,5.53266666817508,0.09144533565744184,0.02156440712147846,0.9480374769265877,0.40512671216365304,0.9805799706879065,2.3688560612670235,0.010623072339815555,0.262632360691747
+Hoja 'CN 40_3',Logístico,,,33.22144016533898,1.0000000000000003e-09,,12.908570047400625,0.034504881171673066,-2.5394425254174574e-06,-7.995550515305893e-05,4.644365044123039,0.1255708564812875,0.00040335837170759736,0.31982747557137026,-0.017818851573383254,0.7668925320982787,9.832355372393124,0.009936629020183881,0.9046351222945311
+Hoja 'CN 40_3',Gompertz,,,31.834457845441644,,0.5176043976788148,54.160962868933225,0.031026841789028627,0.00028688130689654583,-0.00010850560666694169,5.563555131046692,0.1274495273167429,0.008787522360432074,0.9594962206022288,0.07383112216438381,0.9901476463199155,2.3993621255213755,0.00947870314808122,0.18597961680770014
+Hoja 'CN 40_3',Moser,3.8876016632563606e-18,,33.57477009690808,,,1.096460288594117,0.030185732466111573,0.0003629441101266497,-0.00012466429024338797,5.5583024866998665,0.14100634922919242,0.003940279290559907,0.9833638056919765,0.12096647207692113,0.9863631296455984,1.5377120467535135,0.00923435467053836,0.21880271545698277
+Hoja 'CN 40_3',Baranyi,,6.15369693518996e-08,33.22174539825488,,0.0037482505471686453,63.64886591047453,0.0293333333401085,0.0003710577464254896,-0.00010888675564952543,5.5253333344243405,0.09300880907363902,0.015175037610684118,0.8481346735658752,0.1769993284669692,0.9445461030031742,4.645980028926258,0.00893519274918457,0.4412262959539989

examples/multiple_files.zip

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:23612d5dea4647f56fbe64c2abd921d13c66a864beb1067c5b851b508e6e963f
+size 1327891

examples/product_formation_fits.csv

@@ -0,0 +1,6 @@
+Model,R2,RMSE,AIC,BIC,alpha,beta,gamma,Pmax,Yp/x,Yp/s,Productivity
+Luedeking-Piret,0.9789,0.0342,-38.45,-35.67,0.234,0.0123,,,0.312,0.128,2.34
+Modified-LP,0.9834,0.0303,-40.23,-36.89,0.256,0.0098,0.0034,,0.328,0.134,2.51
+Gaden-Type-I,0.9678,0.0423,-35.12,-32.78,0.298,,,18.5,0.298,0.122,2.12
+Gaden-Type-II,0.9812,0.0323,-39.34,-36.45,0.189,0.0156,,,0.345,0.141,2.43
+Product-Inhibition,0.9856,0.0283,-41.67,-38.12,0.267,0.0089,,16.7,0.334,0.137,2.48