similarity_results.csv

Method,sparse_MF_correlation,sparse_CC_correlation,sparse_BP_correlation,sparse_Ave_correlation,200_MF_correlation,200_CC_correlation,200_BP_correlation,200_Ave_correlation,500_MF_correlation,500_CC_correlation,500_BP_correlation,500_Ave_correlation
AAC,-0.0120530487301072,0.0912116785938685,0.2141018739428611,0.0977535012688741,,,,,,,,
APAAC,0.1716732195001037,0.240874262539882,0.2735843497262189,0.2287106105887349,,,,,,,,
LEARNED-VEC,0.4099830116701563,0.3051938408310146,0.2987112063885428,0.3379626862965713,,,,,,,,
PROTVEC,0.1854412229985308,0.2058335849333736,0.2952566916292122,0.2288438331870389,,,,,,,,
K-SEP,0.2222351644321201,0.2943533697632057,0.2924105791926405,0.2696663711293221,,,,,,,,
MUT2VEC^,0.5462247913812742,0.3948878923766817,0.5799222876570942,0.50701165713835,,,,,,,,
GENE2VEC^,0.1756222504801268,0.359607993537279,0.407953665862896,0.3143946366267673,,,,,,,,
ProtXLNET,0.2270935836252544,0.2549405428464779,0.3090004241910071,0.2636781835542465,,,,,,,,
ProtT5,0.5663605927245389,0.3984518032670328,0.2126939158889831,0.392502103960185,,,,,,,,
SEQVEC,0.4237953500744624,0.4242066438730631,0.2436484071644948,0.3638834670373401,,,,,,,,
TCGA-EMBEDDING,0.0375448135213401,0.5033396964743626,0.4822408636127631,0.3410417912028219,,,,,,,,
PFAM^,0.3489483982233921,0.510730419386372,0.422215963284985,0.4272982602982497,,,,,,,,
CPC-PROT,0.0604542610865414,-0.0869798610000177,0.1090657842339456,0.0275133947734897,,,,,,,,
ESM1B,0.384697625027269,0.3731936223537567,0.4151856052080267,0.3910256175296842,,,,,,,,
ProtBERT-BFD,0.2918631086847955,0.4157201514424359,0.3234845992693526,0.3436892864655279,,,,,,,,
TAPE-BERT-PFAM^,0.4964861293154893,0.2217707389039976,0.2068266617033433,0.3083611766409434,,,,,,,,
ProtALBERT,0.2218813721583892,0.3181002150766988,0.3690126305036619,0.3029980725795833,,,,,,,,
BLAST,0.1127460653100103,0.0884833522711429,0.3431671202767732,0.1814655126193088,,,,,,,,
HMMER,0.1373599246282869,0.3218542802568603,0.1577102930764373,0.2056414993205282,,,,,,,,
UNIREP,0.4213327475751828,0.3247590759614522,0.4695106024457135,0.4052008086607828,,,,,,,,
ESM2-650m,0.2977856665086115,0.281050143088217,0.4273702754644458,0.3354020283537581,,,,,,,,
ESM3-small,0.5102468363444927,0.5762295810448107,0.4227236525442803,0.5030666899778612,,,,,,,,
SaProt-35m-af2,0.4031774477652035,0.3690662827280969,0.2418927575878248,0.3380454960270417,,,,,,,,
ProstT5,0.4474307637665665,0.4155957269059172,0.0806352476756064,0.3145539127826967,,,,,,,,
ProtHGT-TAPE-MF-sim,0.0676426208867526,0.2256642052045639,0.1130999435347261,0.1354689232086809,0.1046625870719076,0.0238279343234809,0.0698222676221539,0.0661042630058474,0.0562899711836086,0.0114963837042151,0.0325825354877617,0.0334562967918618
ProtHGT-TAPE-BP-sim,0.4424859852307816,0.3767270633862561,0.2706400046729882,0.3632843510966753,0.2143909167941879,-0.0071818570350743,0.1447744236104239,0.1173278277898458,0.2117889857352714,-0.0018704341207202,0.0746192793045373,0.0948459436396961
ProtHGT-TAPE-CC-sim,0.2212604798497097,0.4630823969388991,0.1270186335403726,0.2704538367763271,0.085973478542632,0.1015261525058111,0.0479394582610972,0.0784796964365135,0.1162193876485697,0.0557492273127652,0.0472710508457386,0.0730798886023578
ProtHGT-ProtT5-MF-sim,-0.0832921966964116,0.0739715532316429,0.0806411729200334,0.0237735098184215,0.028233518352841,0.0509639393305118,0.0725070354735275,0.0505681643856268,0.0190007028033543,0.0175142952144854,0.0615461153444059,0.0326870377874152
ProtHGT-ProtT5-CC-sim,-0.1611683471066122,0.4360532056720397,0.2133199633949259,0.1627349406534511,0.0483196915996448,0.052080276149592,-0.0059642086679254,0.0314785863604371,0.028616800255214,0.0618820703296473,0.0550623536726336,0.0485204080858317
ProtHGT-ProtT5-BP-sim,0.4428227394002378,0.3422052738196235,0.3019071633014661,0.3623117255071091,0.1664744430958502,0.02445474411873,0.1203713554443648,0.1037668475529817,0.192658828730332,-0.0026714534349827,0.0996770164875359,0.0965547972609617
ProtHGT-ESM2-BP-sim,0.3847551287560082,0.3351541804456603,0.219428921902685,0.3131127437014511,0.1301583536501021,0.0200412462911787,0.0698632597882439,0.0733542865765082,0.1473732693228525,0.0082744328947388,0.0419182893687102,0.0658553305287672
ProtHGT-ESM2-CC-sim,0.0813226344768319,0.3969562130997108,0.2426040226639927,0.2402942900801784,0.0470307960894307,0.1601992506561486,0.1060445981180016,0.1044248816211936,0.0429355692740338,0.1042126175585608,0.0670102492040006,0.0713861453455317
ProtHGT-ESM2-MF-sim,0.0868915691545172,0.2241503194417992,0.1096828209271987,0.1402415698411717,0.1172293506892731,-0.0488488478445351,0.0639934841989273,0.0441246623478884,0.0802552419869001,-0.0026646079090276,0.0546650908307462,0.0440852416362062
ProtHGT-TAPE-sim,0.162571322934258,0.3788436899423446,0.1408730699585272,0.2274293609450433,0.1275519972633517,0.0532139726972253,0.0805145733501943,0.0870935144369238,0.0951652183848205,0.0275043259658933,0.0459752173293225,0.0562149205600121
ProtHGT-ProtT5-sim,-0.0934327940603359,0.4167146406496182,0.2127358398722716,0.1786725621538513,0.053133156625212,0.0656871861781072,0.0523244307275043,0.0570482578436079,0.0428466022625695,0.0511287699496268,0.0786334438219018,0.057536272011366
ProtHGT-ESM2-sim,0.1637814395491291,0.381591192409578,0.2104285519577873,0.2519337279721649,0.1211389635519458,0.0686563949226464,0.0951775350556232,0.0949909645100718,0.0901291725605845,0.0644850061863429,0.0734338564904214,0.0760160117457829