derm-ai / app /services /MagicConvert.py
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import copy
import html
import mimetypes
import os
import re
import tempfile
import traceback
from typing import Any, Dict, List, Optional, Union
from urllib.parse import quote, unquote, urlparse, urlunparse
from warnings import warn, resetwarnings, catch_warnings
import mammoth
import markdownify
import pandas as pd
import pdfminer
import pdfminer.high_level
import pptx
import puremagic
import requests
from bs4 import BeautifulSoup
from charset_normalizer import from_path
from PIL import Image
import pytesseract
import warnings
warnings.filterwarnings("ignore")
# Set Tesseract path for Linux (Hugging Face Spaces)
pytesseract.pytesseract.tesseract_cmd = "/usr/bin/tesseract"
class OCRReader:
def __init__(self, tesseract_cmd: Optional[str] = None, config: Optional[Dict] = None):
# Use provided tesseract_cmd or fallback to environment default
if tesseract_cmd:
pytesseract.pytesseract.tesseract_cmd = tesseract_cmd
self.config = config or {}
def read_text_from_image(self, image: Image.Image) -> str:
try:
text = pytesseract.image_to_string(image, **self.config)
return text.strip()
except Exception as e:
raise Exception(f"Error processing image: {str(e)}")
class _CustomMarkdownify(markdownify.MarkdownConverter):
def __init__(self, **options: Any):
options["heading_style"] = options.get("heading_style", markdownify.ATX)
super().__init__(**options)
def convert_a(self, el: Any, text: str, *args, **kwargs):
prefix, suffix, text = markdownify.chomp(text)
if not text:
return ""
href = el.get("href")
title = el.get("title")
if href:
try:
parsed_url = urlparse(href) # type: ignore
if parsed_url.scheme and parsed_url.scheme.lower() not in ["http", "https", "file"]: # type: ignore
return "%s%s%s" % (prefix, text, suffix)
href = urlunparse(parsed_url._replace(path=quote(unquote(parsed_url.path)))) # type: ignore
except ValueError:
return "%s%s%s" % (prefix, text, suffix)
if (
self.options["autolinks"]
and text.replace(r"\_", "_") == href
and not title
and not self.options["default_title"]
):
return "<%s>" % href
if self.options["default_title"] and not title:
title = href
title_part = ' "%s"' % title.replace('"', r"\"") if title else ""
return (
"%s[%s](%s%s)%s" % (prefix, text, href, title_part, suffix)
if href
else text
)
def convert_hn(self, n: int, el: Any, text: str, convert_as_inline: bool) -> str:
if not convert_as_inline:
if not re.search(r"^\n", text):
return "\n" + super().convert_hn(n, el, text, convert_as_inline) # type: ignore
return super().convert_hn(n, el, text, convert_as_inline) # type: ignore
def convert_img(self, el: Any, text: str, *args, **kwargs) -> str:
# Handle both old and new calling patterns
convert_as_inline = kwargs.get('convert_as_inline', False)
if len(args) > 0:
convert_as_inline = args[0]
alt = el.attrs.get("alt", None) or ""
src = el.attrs.get("src", None) or ""
title = el.attrs.get("title", None) or ""
title_part = ' "%s"' % title.replace('"', r"\"") if title else ""
if (
convert_as_inline
and el.parent.name not in self.options["keep_inline_images_in"]
):
return alt
if src.startswith("data:"):
src = src.split(",")[0] + "..."
return "![%s](%s%s)" % (alt, src, title_part)
def convert_soup(self, soup: Any) -> str:
return super().convert_soup(soup)
class DocumentConverterResult:
def __init__(self, title: Union[str, None] = None, text_content: str = ""):
self.title: Union[str, None] = title
self.text_content: str = text_content
class DocumentConverter:
def convert(self, local_path: str, **kwargs: Any) -> Union[None, DocumentConverterResult]:
raise NotImplementedError()
def supports_extension(self, ext: str) -> bool:
"""Return True if this converter supports the given extension."""
raise NotImplementedError()
class PlainTextConverter(DocumentConverter):
def convert(
self, local_path: str, **kwargs: Any
) -> Union[None, DocumentConverterResult]:
content_type, _ = mimetypes.guess_type(
"__placeholder" + kwargs.get("file_extension", "")
)
if content_type is None:
return None
elif "text/" not in content_type.lower():
return None
text_content = str(from_path(local_path).best())
return DocumentConverterResult(
title=None,
text_content=text_content,
)
class HtmlConverter(DocumentConverter):
def convert(
self, local_path: str, **kwargs: Any
) -> Union[None, DocumentConverterResult]:
extension = kwargs.get("file_extension", "")
if extension.lower() not in [".html", ".htm"]:
return None
result = None
with open(local_path, "rt", encoding="utf-8") as fh:
result = self._convert(fh.read())
return result
def _convert(self, html_content: str) -> Union[None, DocumentConverterResult]:
soup = BeautifulSoup(html_content, "html.parser")
for script in soup(["script", "style"]):
script.extract()
body_elm = soup.find("body")
webpage_text = ""
if body_elm:
webpage_text = _CustomMarkdownify().convert_soup(body_elm)
else:
webpage_text = _CustomMarkdownify().convert_soup(soup)
assert isinstance(webpage_text, str)
return DocumentConverterResult(
title=None if soup.title is None else soup.title.string,
text_content=webpage_text,
)
class PdfConverter(DocumentConverter):
def supports_extension(self, ext: str) -> bool:
return ext.lower() == '.pdf'
def convert(self, local_path, **kwargs) -> Union[None, DocumentConverterResult]:
extension = kwargs.get("file_extension", "")
if extension.lower() != ".pdf":
return None
return DocumentConverterResult(
title=None,
text_content=pdfminer.high_level.extract_text(local_path),
)
class DocxConverter(HtmlConverter):
def supports_extension(self, ext: str) -> bool:
return ext.lower() == '.docx'
def convert(self, local_path, **kwargs) -> Union[None, DocumentConverterResult]:
extension = kwargs.get("file_extension", "")
if extension.lower() != ".docx":
return None
result = None
with open(local_path, "rb") as docx_file:
style_map = kwargs.get("style_map", None)
result = mammoth.convert_to_html(docx_file, style_map=style_map)
html_content = result.value
result = self._convert(html_content)
return result
class XlsxConverter(HtmlConverter):
def convert(self, local_path, **kwargs) -> Union[None, DocumentConverterResult]:
extension = kwargs.get("file_extension", "")
if extension.lower() != ".xlsx":
return None
sheets = pd.read_excel(local_path, sheet_name=None)
md_content = ""
for s in sheets:
md_content += f"## {s}\n"
html_content = sheets[s].to_html(index=False)
md_content += self._convert(html_content).text_content.strip() + "\n\n"
return DocumentConverterResult(
title=None,
text_content=md_content.strip(),
)
class PptxConverter(HtmlConverter):
def supports_extension(self, ext: str) -> bool:
return ext.lower() == '.pptx'
def convert(self, local_path, **kwargs) -> Union[None, DocumentConverterResult]:
extension = kwargs.get("file_extension", "")
if extension.lower() != ".pptx":
return None
md_content = ""
presentation = pptx.Presentation(local_path)
slide_num = 0
for slide in presentation.slides:
slide_num += 1
md_content += f"\n\n<!-- Slide number: {slide_num} -->\n"
title = slide.shapes.title
for shape in slide.shapes:
if self._is_picture(shape):
alt_text = ""
try:
alt_text = shape._element._nvXxPr.cNvPr.attrib.get("descr", "")
except Exception:
pass
filename = re.sub(r"\W", "", shape.name) + ".jpg"
md_content += (
"\n!["
+ (alt_text if alt_text else shape.name)
+ "]("
+ filename
+ ")\n"
)
# Tables
if self._is_table(shape):
html_table = "<html><body><table>"
first_row = True
for row in shape.table.rows:
html_table += "<tr>"
for cell in row.cells:
if first_row:
html_table += "<th>" + html.escape(cell.text) + "</th>"
else:
html_table += "<td>" + html.escape(cell.text) + "</td>"
html_table += "</tr>"
first_row = False
html_table += "</table></body></html>"
md_content += (
"\n" + self._convert(html_table).text_content.strip() + "\n"
)
if shape.has_chart:
md_content += self._convert_chart_to_markdown(shape.chart)
elif shape.has_text_frame:
if shape == title:
md_content += "# " + shape.text.lstrip() + "\n"
else:
md_content += shape.text + "\n"
md_content = md_content.strip()
if slide.has_notes_slide:
md_content += "\n\n### Notes:\n"
notes_frame = slide.notes_slide.notes_text_frame
if notes_frame is not None:
md_content += notes_frame.text
md_content = md_content.strip()
return DocumentConverterResult(
title=None,
text_content=md_content.strip(),
)
def _is_picture(self, shape):
if shape.shape_type == pptx.enum.shapes.MSO_SHAPE_TYPE.PICTURE:
return True
if shape.shape_type == pptx.enum.shapes.MSO_SHAPE_TYPE.PLACEHOLDER:
if hasattr(shape, "image"):
return True
return False
def _is_table(self, shape):
if shape.shape_type == pptx.enum.shapes.MSO_SHAPE_TYPE.TABLE:
return True
return False
def _convert_chart_to_markdown(self, chart):
md = "\n\n### Chart"
if chart.has_title:
md += f": {chart.chart_title.text_frame.text}"
md += "\n\n"
data = []
category_names = [c.label for c in chart.plots[0].categories]
series_names = [s.name for s in chart.series]
data.append(["Category"] + series_names)
for idx, category in enumerate(category_names):
row = [category]
for series in chart.series:
row.append(series.values[idx])
data.append(row)
markdown_table = []
for row in data:
markdown_table.append("| " + " | ".join(map(str, row)) + " |")
header = markdown_table[0]
separator = "|" + "|".join(["---"] * len(data[0])) + "|"
return md + "\n".join([header, separator] + markdown_table[1:])
class FileConversionException(BaseException):
pass
class UnsupportedFormatException(BaseException):
pass
class ImageConverter(DocumentConverter):
def __init__(self, ocr_reader: Optional[OCRReader] = None):
self.ocr_reader = ocr_reader or OCRReader()
def convert(self, local_path: str, **kwargs: Any) -> Union[None, DocumentConverterResult]:
extension = kwargs.get("file_extension", "").lower()
if extension not in ['.png', '.jpg', '.jpeg', '.tiff', '.bmp']:
return None
try:
image = Image.open(local_path)
text_content = self.ocr_reader.read_text_from_image(image)
markdown_content = self._convert_to_markdown_structure(text_content)
return DocumentConverterResult(
title=None,
text_content=markdown_content
)
except Exception as e:
raise FileConversionException(f"Failed to process image: {str(e)}")
def _convert_to_markdown_structure(self, text_content: str) -> str:
lines = text_content.split('\n')
markdown = []
current_table = []
in_table = False
i = 0
while i < len(lines):
line = lines[i].strip()
next_line = lines[i + 1].strip() if i + 1 < len(lines) else ""
if not line:
if in_table:
markdown.extend(self._format_table(current_table))
current_table = []
in_table = False
markdown.append("")
i += 1
continue
header_level = self._detect_header_level(line, next_line)
if header_level:
if in_table:
markdown.extend(self._format_table(current_table))
current_table = []
in_table = False
markdown.append(f"{'#' * header_level} {line}")
i += 2 if header_level > 0 and next_line and set(next_line) in [set('='), set('-')] else 1
continue
list_format = self._detect_list_format(line)
if list_format:
if in_table:
markdown.extend(self._format_table(current_table))
current_table = []
in_table = False
markdown.append(list_format)
i += 1
continue
if self._is_likely_table_row(line):
in_table = True
current_table.append(line)
i += 1
continue
if in_table:
markdown.extend(self._format_table(current_table))
current_table = []
in_table = False
line = self._format_emphasis(line)
markdown.append(line)
i += 1
if current_table:
markdown.extend(self._format_table(current_table))
return "\n\n".join([l for l in markdown if l])
def _detect_header_level(self, line: str, next_line: str) -> int:
if line.startswith('#'):
return len(re.match(r'^#+', line).group())
if next_line:
if set(next_line) == set('='):
return 1
if set(next_line) == set('-'):
return 2
if len(line) <= 100 and line.strip():
words = line.split()
if all(word[0].isupper() for word in words if word):
return 1
if line[0].isupper() and len(words) <= 10:
return 2
return 0
def _detect_list_format(self, line: str) -> Optional[str]:
bullet_points = ['-', '•', '*', '○', '►', '·']
for bullet in bullet_points:
if line.lstrip().startswith(bullet):
content = line.lstrip()[1:].strip()
return f"- {content}"
if re.match(r'^\d+[\.\)]', line):
content = re.sub(r'^\d+[\.\)]', '', line).strip()
return f"1. {content}"
return None
def _is_likely_table_row(self, line: str) -> bool:
parts = [p for p in re.split(r'\s{2,}', line) if p.strip()]
if len(parts) >= 2:
lengths = [len(p) for p in parts]
avg_length = sum(lengths) / len(lengths)
if all(abs(l - avg_length) <= 5 for l in lengths):
return True
return False
def _format_table(self, table_rows: List[str]) -> List[str]:
if not table_rows:
return []
split_rows = [re.split(r'\s{2,}', row.strip()) for row in table_rows]
max_cols = max(len(row) for row in split_rows)
normalized_rows = []
for row in split_rows:
while len(row) < max_cols:
row.append('')
normalized_rows.append(row)
col_widths = []
for col in range(max_cols):
width = max(len(row[col]) for row in normalized_rows)
col_widths.append(width)
markdown_table = []
header = "| " + " | ".join(cell.ljust(width) for cell, width in zip(normalized_rows[0], col_widths)) + " |"
markdown_table.append(header)
separator = "|" + "|".join("-" * (width + 2) for width in col_widths) + "|"
markdown_table.append(separator)
for row in normalized_rows[1:]:
formatted_row = "| " + " | ".join(cell.ljust(width) for cell, width in zip(row, col_widths)) + " |"
markdown_table.append(formatted_row)
return markdown_table
def _format_emphasis(self, text: str) -> str:
text = re.sub(r'\b([A-Z]{2,})\b', r'**\1**', text)
text = re.sub(r'[_/](.*?)[_/]', r'*\1*', text)
return text
class MagicConvert:
def __init__(
self,
requests_session: Optional[requests.Session] = None,
style_map: Optional[str] = None,
):
if requests_session is None:
self._requests_session = requests.Session()
else:
self._requests_session = requests_session
self._style_map = style_map
self._page_converters: List[DocumentConverter] = []
ocr_reader = OCRReader()
self.register_page_converter(ImageConverter(ocr_reader))
self.register_page_converter(PlainTextConverter())
self.register_page_converter(HtmlConverter())
self.register_page_converter(DocxConverter())
self.register_page_converter(XlsxConverter())
self.register_page_converter(PptxConverter())
self.register_page_converter(PdfConverter())
def magic(
self, source: Union[str, requests.Response], **kwargs: Any
) -> DocumentConverterResult:
if isinstance(source, str):
if (
source.startswith("http://")
or source.startswith("https://")
or source.startswith("file://")
):
return self.convert_url(source, **kwargs)
else:
return self.convert_local(source, **kwargs)
elif isinstance(source, requests.Response):
return self.convert_response(source, **kwargs)
def convert_local(
self, path: str, **kwargs: Any
) -> DocumentConverterResult:
ext = kwargs.get("file_extension")
extensions = [ext] if ext is not None else []
base, ext = os.path.splitext(path)
self._append_ext(extensions, ext)
for g in self._guess_ext_magic(path):
self._append_ext(extensions, g)
return self._convert(path, extensions, **kwargs)
def convert_stream(
self, stream: Any, **kwargs: Any
) -> DocumentConverterResult:
ext = kwargs.get("file_extension")
extensions = [ext] if ext is not None else []
handle, temp_path = tempfile.mkstemp()
fh = os.fdopen(handle, "wb")
result = None
try:
content = stream.read()
if isinstance(content, str):
fh.write(content.encode("utf-8"))
else:
fh.write(content)
fh.close()
for g in self._guess_ext_magic(temp_path):
self._append_ext(extensions, g)
result = self._convert(temp_path, extensions, **kwargs)
finally:
try:
fh.close()
except Exception:
pass
os.unlink(temp_path)
return result
def convert_url(
self, url: str, **kwargs: Any
) -> DocumentConverterResult:
response = self._requests_session.get(url, stream=True)
response.raise_for_status()
return self.convert_response(response, **kwargs)
def convert_response(
self, response: requests.Response, **kwargs: Any
) -> DocumentConverterResult:
ext = kwargs.get("file_extension")
extensions = [ext] if ext is not None else []
content_type = response.headers.get("content-type", "").split(";")[0]
self._append_ext(extensions, mimetypes.guess_extension(content_type))
content_disposition = response.headers.get("content-disposition", "")
m = re.search(r"filename=([^;]+)", content_disposition)
if m:
base, ext = os.path.splitext(m.group(1).strip("\"'"))
self._append_ext(extensions, ext)
base, ext = os.path.splitext(urlparse(response.url).path)
self._append_ext(extensions, ext)
handle, temp_path = tempfile.mkstemp()
fh = os.fdopen(handle, "wb")
result = None
try:
for chunk in response.iter_content(chunk_size=512):
fh.write(chunk)
fh.close()
for g in self._guess_ext_magic(temp_path):
self._append_ext(extensions, g)
result = self._convert(temp_path, extensions, url=response.url, **kwargs)
finally:
try:
fh.close()
except Exception:
pass
os.unlink(temp_path)
return result
def _convert(
self, local_path: str, extensions: List[Union[str, None]], **kwargs
) -> DocumentConverterResult:
error_trace = ""
for ext in extensions + [None]:
for converter in self._page_converters:
_kwargs = copy.deepcopy(kwargs)
if ext is None:
if "file_extension" in _kwargs:
del _kwargs["file_extension"]
else:
_kwargs.update({"file_extension": ext})
_kwargs["_parent_converters"] = self._page_converters
if "style_map" not in _kwargs and self._style_map is not None:
_kwargs["style_map"] = self._style_map
try:
res = converter.convert(local_path, **_kwargs)
if res is not None:
res.text_content = "\n".join(
[line.rstrip() for line in re.split(r"\r?\n", res.text_content)]
)
res.text_content = re.sub(r"\n{3,}", "\n\n", res.text_content)
return res
except Exception as e:
# If this converter supports the extension and fails, raise the exception
if ext is not None and converter.supports_extension(ext):
raise FileConversionException(
f"Could not convert '{local_path}' to Markdown with {converter.__class__.__name__} "
f"for extension '{ext}'. The following error occurred:\n\n{traceback.format_exc()}"
)
# Otherwise, store the error and continue
error_trace = ("\n\n" + traceback.format_exc()).strip()
if len(error_trace) > 0:
raise FileConversionException(
f"Could not convert '{local_path}' to Markdown. File type was recognized as {extensions}. "
f"While converting the file, the following error was encountered:\n\n{error_trace}"
)
raise UnsupportedFormatException(
f"Could not convert '{local_path}' to Markdown. The formats {extensions} are not supported."
)
def _append_ext(self, extensions, ext):
if ext is None:
return
ext = ext.strip()
if ext == "":
return
extensions.append(ext)
def _guess_ext_magic(self, path):
try:
guesses = puremagic.magic_file(path)
extensions = list()
for g in guesses:
ext = g.extension.strip()
if len(ext) > 0:
if not ext.startswith("."):
ext = "." + ext
if ext not in extensions:
extensions.append(ext)
return extensions
except FileNotFoundError:
pass
except IsADirectoryError:
pass
except PermissionError:
pass
return []
def register_page_converter(self, converter: DocumentConverter) -> None:
self._page_converters.insert(0, converter)