track-tonic / dataset_utils.py
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#!/usr/bin/env python3
"""
Dataset utilities for Trackio experiment data management
Provides functions for safe dataset operations with data preservation
"""
import json
import logging
from datetime import datetime
from typing import Dict, Any, List, Optional, Union
from datasets import Dataset, load_dataset
logger = logging.getLogger(__name__)
class TrackioDatasetManager:
"""
Manager class for Trackio experiment datasets with data preservation.
This class ensures that existing experiment data is always preserved
when adding new experiments or updating existing ones.
"""
def __init__(self, dataset_repo: str, hf_token: str):
"""
Initialize the dataset manager.
Args:
dataset_repo (str): HF dataset repository ID (e.g., "username/dataset-name")
hf_token (str): Hugging Face token for authentication
"""
self.dataset_repo = dataset_repo
self.hf_token = hf_token
self._validate_repo_format()
def _validate_repo_format(self):
"""Validate dataset repository format"""
if not self.dataset_repo or '/' not in self.dataset_repo:
raise ValueError(f"Invalid dataset repository format: {self.dataset_repo}")
def check_dataset_exists(self) -> bool:
"""
Check if the dataset repository exists and is accessible.
Returns:
bool: True if dataset exists and is accessible, False otherwise
"""
try:
# Try standard load first
load_dataset(self.dataset_repo, token=self.hf_token)
logger.info(f"βœ… Dataset {self.dataset_repo} exists and is accessible")
return True
except Exception as e:
# Retry with relaxed verification to handle split metadata mismatches
try:
logger.info(f"πŸ“Š Standard load failed: {e}. Retrying with relaxed verification...")
load_dataset(
self.dataset_repo,
token=self.hf_token,
verification_mode="no_checks" # type: ignore[arg-type]
)
logger.info(f"βœ… Dataset {self.dataset_repo} accessible with relaxed verification")
return True
except Exception as e2:
logger.info(f"πŸ“Š Dataset {self.dataset_repo} doesn't exist or isn't accessible: {e2}")
return False
def load_existing_experiments(self) -> List[Dict[str, Any]]:
"""
Load all existing experiments from the dataset.
Returns:
List[Dict[str, Any]]: List of existing experiment dictionaries
"""
try:
if not self.check_dataset_exists():
logger.info("πŸ“Š No existing dataset found, returning empty list")
return []
# Load with relaxed verification to avoid split-metadata mismatches blocking reads
try:
dataset = load_dataset(self.dataset_repo, token=self.hf_token)
except Exception:
dataset = load_dataset(self.dataset_repo, token=self.hf_token, verification_mode="no_checks") # type: ignore[arg-type]
if 'train' not in dataset:
logger.info("πŸ“Š No 'train' split found in dataset")
return []
experiments = list(dataset['train'])
logger.info(f"πŸ“Š Loaded {len(experiments)} existing experiments")
# Validate experiment structure
valid_experiments = []
for exp in experiments:
if self._validate_experiment_structure(exp):
valid_experiments.append(exp)
else:
logger.warning(f"⚠️ Skipping invalid experiment: {exp.get('experiment_id', 'unknown')}")
logger.info(f"πŸ“Š {len(valid_experiments)} valid experiments loaded")
return valid_experiments
except Exception as e:
logger.error(f"❌ Failed to load existing experiments: {e}")
return []
def _validate_experiment_structure(self, experiment: Dict[str, Any]) -> bool:
"""
Validate and SANITIZE an experiment structure to prevent destructive failures.
- Requires 'experiment_id'; otherwise skip the row.
- Fills defaults for missing non-JSON fields.
- Normalizes JSON fields to valid JSON strings.
"""
if not experiment.get('experiment_id'):
logger.warning("⚠️ Missing required field 'experiment_id' in experiment; skipping row")
return False
defaults = {
'name': '',
'description': '',
'created_at': datetime.now().isoformat(),
'status': 'running',
}
for key, default_value in defaults.items():
if experiment.get(key) in (None, ''):
experiment[key] = default_value
def _ensure_json_string(field_name: str, default_value: Any):
raw_value = experiment.get(field_name)
try:
if isinstance(raw_value, str):
if raw_value.strip() == '':
experiment[field_name] = json.dumps(default_value, default=str)
else:
json.loads(raw_value)
else:
experiment[field_name] = json.dumps(
raw_value if raw_value is not None else default_value,
default=str
)
except Exception:
experiment[field_name] = json.dumps(default_value, default=str)
for json_field, default in (('metrics', []), ('parameters', {}), ('artifacts', []), ('logs', [])):
_ensure_json_string(json_field, default)
return True
def save_experiments(self, experiments: List[Dict[str, Any]], commit_message: Optional[str] = None) -> bool:
"""
Save a list of experiments to the dataset using a non-destructive union merge.
- Loads existing experiments (if any) and builds a union by `experiment_id`.
- For overlapping IDs, merges JSON fields:
- metrics: concatenates lists and de-duplicates by (step, timestamp) for nested entries
- parameters: dict-update (new values override)
- artifacts: union with de-dup
- logs: concatenation with de-dup
- Non-JSON scalar fields from incoming experiments take precedence.
Args:
experiments (List[Dict[str, Any]]): List of experiment dictionaries
commit_message (Optional[str]): Custom commit message
Returns:
bool: True if save was successful, False otherwise
"""
try:
if not experiments:
logger.warning("⚠️ No experiments to save")
return False
# Helpers
def _parse_json_field(value, default):
try:
if value is None:
return default
if isinstance(value, str):
return json.loads(value) if value else default
return value
except Exception:
return default
def _metrics_key(entry: Dict[str, Any]):
if isinstance(entry, dict):
return (entry.get('step'), entry.get('timestamp'))
return (None, json.dumps(entry, sort_keys=True))
# Load existing experiments for union merge
existing = {}
dataset_exists = self.check_dataset_exists()
try:
existing_list = self.load_existing_experiments()
for row in existing_list:
exp_id = row.get('experiment_id')
if exp_id:
existing[exp_id] = row
except Exception:
existing = {}
# Safety guard: avoid destructive overwrite if dataset exists but
# we failed to read any existing records (e.g., transient HF issue)
if dataset_exists and len(existing) == 0 and len(experiments) <= 3:
logger.error(
"❌ Refusing to overwrite dataset: existing records could not be loaded "
"but repository exists. Skipping save to prevent data loss."
)
return False
# Validate and merge
merged_map: Dict[str, Dict[str, Any]] = {}
# Seed with existing
for exp_id, row in existing.items():
merged_map[exp_id] = row
# Apply incoming
for exp in experiments:
if not self._validate_experiment_structure(exp):
logger.error(f"❌ Invalid experiment structure: {exp.get('experiment_id', 'unknown')}")
return False
exp_id = exp['experiment_id']
incoming = exp
if exp_id not in merged_map:
incoming['last_updated'] = incoming.get('last_updated') or datetime.now().isoformat()
merged_map[exp_id] = incoming
continue
# Merge with existing
base = merged_map[exp_id]
# Parse JSON fields
base_metrics = _parse_json_field(base.get('metrics'), [])
base_params = _parse_json_field(base.get('parameters'), {})
base_artifacts = _parse_json_field(base.get('artifacts'), [])
base_logs = _parse_json_field(base.get('logs'), [])
inc_metrics = _parse_json_field(incoming.get('metrics'), [])
inc_params = _parse_json_field(incoming.get('parameters'), {})
inc_artifacts = _parse_json_field(incoming.get('artifacts'), [])
inc_logs = _parse_json_field(incoming.get('logs'), [])
# Merge metrics with de-dup
merged_metrics = []
seen = set()
for entry in base_metrics + inc_metrics:
try:
# Use the original entry so _metrics_key can properly
# distinguish dict vs non-dict entries
key = _metrics_key(entry)
except Exception:
key = (None, None)
if key not in seen:
seen.add(key)
merged_metrics.append(entry)
# Merge params
merged_params = {}
if isinstance(base_params, dict):
merged_params.update(base_params)
if isinstance(inc_params, dict):
merged_params.update(inc_params)
# Merge artifacts and logs with de-dup
def _dedup_list(lst):
out = []
seen_local = set()
for item in lst:
key = json.dumps(item, sort_keys=True, default=str) if not isinstance(item, str) else item
if key not in seen_local:
seen_local.add(key)
out.append(item)
return out
merged_artifacts = _dedup_list(list(base_artifacts) + list(inc_artifacts))
merged_logs = _dedup_list(list(base_logs) + list(inc_logs))
# Rebuild merged record preferring incoming scalars
merged_rec = dict(base)
merged_rec.update({k: v for k, v in incoming.items() if k not in ('metrics', 'parameters', 'artifacts', 'logs')})
merged_rec['metrics'] = json.dumps(merged_metrics, default=str)
merged_rec['parameters'] = json.dumps(merged_params, default=str)
merged_rec['artifacts'] = json.dumps(merged_artifacts, default=str)
merged_rec['logs'] = json.dumps(merged_logs, default=str)
merged_rec['last_updated'] = datetime.now().isoformat()
merged_map[exp_id] = merged_rec
# Prepare final list
valid_experiments = list(merged_map.values())
# Ensure all have mandatory fields encoded
normalized = []
for rec in valid_experiments:
# Normalize json fields to strings
for f, default in (('metrics', []), ('parameters', {}), ('artifacts', []), ('logs', [])):
val = rec.get(f)
if not isinstance(val, str):
rec[f] = json.dumps(val if val is not None else default, default=str)
if 'last_updated' not in rec:
rec['last_updated'] = datetime.now().isoformat()
normalized.append(rec)
dataset = Dataset.from_list(normalized)
# Generate commit message if not provided
if not commit_message:
commit_message = f"Union-merge update with {len(normalized)} experiments ({datetime.now().isoformat()})"
# Push to hub
dataset.push_to_hub(
self.dataset_repo,
token=self.hf_token,
private=True,
commit_message=commit_message
)
logger.info(f"βœ… Successfully saved {len(normalized)} experiments (union-merged) to {self.dataset_repo}")
return True
except Exception as e:
logger.error(f"❌ Failed to save experiments to dataset: {e}")
return False
def upsert_experiment(self, experiment: Dict[str, Any]) -> bool:
"""
Insert a new experiment or update an existing one, preserving all other data.
Args:
experiment (Dict[str, Any]): Experiment dictionary to upsert
Returns:
bool: True if operation was successful, False otherwise
"""
try:
# Validate the experiment structure
if not self._validate_experiment_structure(experiment):
logger.error(f"❌ Invalid experiment structure for {experiment.get('experiment_id', 'unknown')}")
return False
# Load existing experiments
existing_experiments = self.load_existing_experiments()
# Find if experiment already exists
experiment_id = experiment['experiment_id']
experiment_found = False
updated_experiments = []
for existing_exp in existing_experiments:
if existing_exp.get('experiment_id') == experiment_id:
# Update existing experiment
logger.info(f"πŸ”„ Updating existing experiment: {experiment_id}")
experiment['last_updated'] = datetime.now().isoformat()
updated_experiments.append(experiment)
experiment_found = True
else:
# Preserve existing experiment
updated_experiments.append(existing_exp)
# If experiment doesn't exist, add it
if not experiment_found:
logger.info(f"βž• Adding new experiment: {experiment_id}")
experiment['last_updated'] = datetime.now().isoformat()
updated_experiments.append(experiment)
# Save all experiments
commit_message = f"{'Update' if experiment_found else 'Add'} experiment {experiment_id} (preserving {len(existing_experiments)} existing experiments)"
return self.save_experiments(updated_experiments, commit_message)
except Exception as e:
logger.error(f"❌ Failed to upsert experiment: {e}")
return False
def get_experiment_by_id(self, experiment_id: str) -> Optional[Dict[str, Any]]:
"""
Retrieve a specific experiment by its ID.
Args:
experiment_id (str): The experiment ID to search for
Returns:
Optional[Dict[str, Any]]: The experiment dictionary if found, None otherwise
"""
try:
experiments = self.load_existing_experiments()
for exp in experiments:
if exp.get('experiment_id') == experiment_id:
logger.info(f"βœ… Found experiment: {experiment_id}")
return exp
logger.info(f"πŸ“Š Experiment not found: {experiment_id}")
return None
except Exception as e:
logger.error(f"❌ Failed to get experiment {experiment_id}: {e}")
return None
def list_experiments(self, status_filter: Optional[str] = None) -> List[Dict[str, Any]]:
"""
List all experiments, optionally filtered by status.
Args:
status_filter (Optional[str]): Filter by experiment status (running, completed, failed, paused)
Returns:
List[Dict[str, Any]]: List of experiments matching the filter
"""
try:
experiments = self.load_existing_experiments()
if status_filter:
filtered_experiments = [exp for exp in experiments if exp.get('status') == status_filter]
logger.info(f"πŸ“Š Found {len(filtered_experiments)} experiments with status '{status_filter}'")
return filtered_experiments
logger.info(f"πŸ“Š Found {len(experiments)} total experiments")
return experiments
except Exception as e:
logger.error(f"❌ Failed to list experiments: {e}")
return []
def backup_dataset(self, backup_suffix: Optional[str] = None) -> str:
"""
Create a backup of the current dataset.
Args:
backup_suffix (Optional[str]): Optional suffix for backup repo name
Returns:
str: Backup repository name if successful, empty string otherwise
"""
try:
if not backup_suffix:
backup_suffix = datetime.now().strftime('%Y%m%d_%H%M%S')
backup_repo = f"{self.dataset_repo}-backup-{backup_suffix}"
# Load current experiments
experiments = self.load_existing_experiments()
if not experiments:
logger.warning("⚠️ No experiments to backup")
return ""
# Create backup dataset manager
backup_manager = TrackioDatasetManager(backup_repo, self.hf_token)
# Save to backup
success = backup_manager.save_experiments(
experiments,
f"Backup of {self.dataset_repo} created on {datetime.now().isoformat()}"
)
if success:
logger.info(f"βœ… Backup created: {backup_repo}")
return backup_repo
else:
logger.error("❌ Failed to create backup")
return ""
except Exception as e:
logger.error(f"❌ Failed to create backup: {e}")
return ""
def create_dataset_manager(dataset_repo: str, hf_token: str) -> TrackioDatasetManager:
"""
Factory function to create a TrackioDatasetManager instance.
Args:
dataset_repo (str): HF dataset repository ID
hf_token (str): Hugging Face token
Returns:
TrackioDatasetManager: Configured dataset manager instance
"""
return TrackioDatasetManager(dataset_repo, hf_token)