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# Copyright 2022 Facebook AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch ViT MAE (masked autoencoder) model."""
import collections.abc
import math
from copy import deepcopy
from dataclasses import dataclass
from typing import Optional, Set, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
# correct the above import to the following
from transformers.models.vit_mae.configuration_vit_mae import ViTMAEConfig
from transformers.utils import (
ModelOutput,
add_start_docstrings,
logging,
replace_return_docstrings,
add_start_docstrings_to_model_forward,
)
from transformers.pytorch_utils import (
find_pruneable_heads_and_indices,
prune_linear_layer,
)
from transformers.activations import ACT2FN
from transformers.modeling_outputs import BaseModelOutput
from transformers.modeling_utils import PreTrainedModel
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "ViTMAEConfig"
_CHECKPOINT_FOR_DOC = "facebook/vit-mae-base"
@dataclass
class ViTMAEModelOutput(ModelOutput):
"""
Class for ViTMAEModel's outputs, with potential hidden states and attentions.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Tensor indicating which patches are masked (1) and which are not (0).
ids_restore (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Tensor containing the original index of the (shuffled) masked patches.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
last_hidden_state: torch.FloatTensor = None
mask: torch.LongTensor = None
ids_restore: torch.LongTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class ViTMAEDecoderOutput(ModelOutput):
"""
Class for ViTMAEDecoder's outputs, with potential hidden states and attentions.
Args:
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, patch_size ** 2 * num_channels)`):
Pixel reconstruction logits.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class ViTMAEForPreTrainingOutput(ModelOutput):
"""
Class for ViTMAEForPreTraining's outputs, with potential hidden states and attentions.
Args:
loss (`torch.FloatTensor` of shape `(1,)`):
Pixel reconstruction loss.
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, patch_size ** 2 * num_channels)`):
Pixel reconstruction logits.
mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Tensor indicating which patches are masked (1) and which are not (0).
ids_restore (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Tensor containing the original index of the (shuffled) masked patches.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
mask: torch.LongTensor = None
ids_restore: torch.LongTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
def get_2d_sincos_pos_embed(embed_dim, grid_size, add_cls_token=False):
"""
Create 2D sin/cos positional embeddings.
Args:
embed_dim (`int`):
Embedding dimension.
grid_size (`int`):
The grid height and width.
add_cls_token (`bool`, *optional*, defaults to `False`):
Whether or not to add a classification (CLS) token.
Returns:
(`torch.FloatTensor` of shape (grid_size*grid_size, embed_dim) or (1+grid_size*grid_size, embed_dim): the
position embeddings (with or without classification token)
"""
grid_h = np.arange(grid_size, dtype=np.float32)
grid_w = np.arange(grid_size, dtype=np.float32)
grid = np.meshgrid(grid_w, grid_h) # here w goes first
grid = np.stack(grid, axis=0)
grid = grid.reshape([2, 1, grid_size, grid_size])
pos_embed = get_2d_sincos_pos_embed_from_grid(embed_dim, grid)
if add_cls_token:
pos_embed = np.concatenate([np.zeros([1, embed_dim]), pos_embed], axis=0)
return pos_embed
def get_2d_sincos_pos_embed_from_grid(embed_dim, grid):
if embed_dim % 2 != 0:
raise ValueError("embed_dim must be even")
# use half of dimensions to encode grid_h
emb_h = get_1d_sincos_pos_embed_from_grid(embed_dim // 2, grid[0]) # (H*W, D/2)
emb_w = get_1d_sincos_pos_embed_from_grid(embed_dim // 2, grid[1]) # (H*W, D/2)
emb = np.concatenate([emb_h, emb_w], axis=1) # (H*W, D)
return emb
def get_1d_sincos_pos_embed_from_grid(embed_dim, pos):
"""
embed_dim: output dimension for each position pos: a list of positions to be encoded: size (M,) out: (M, D)
"""
if embed_dim % 2 != 0:
raise ValueError("embed_dim must be even")
omega = np.arange(embed_dim // 2, dtype=float)
omega /= embed_dim / 2.0
omega = 1.0 / 10000**omega # (D/2,)
pos = pos.reshape(-1) # (M,)
out = np.einsum("m,d->md", pos, omega) # (M, D/2), outer product
emb_sin = np.sin(out) # (M, D/2)
emb_cos = np.cos(out) # (M, D/2)
emb = np.concatenate([emb_sin, emb_cos], axis=1) # (M, D)
return emb
class ViTMAEEmbeddings(nn.Module):
"""
Construct the CLS token, position and patch embeddings.
"""
def __init__(self, config):
super().__init__()
self.cls_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.patch_embeddings = ViTMAEPatchEmbeddings(config)
self.num_patches = self.patch_embeddings.num_patches
# fixed sin-cos embedding
self.position_embeddings = nn.Parameter(
torch.zeros(1, self.num_patches + 1, config.hidden_size),
requires_grad=False,
)
self.config = config
self.initialize_weights()
def initialize_weights(self):
# initialize (and freeze) position embeddings by sin-cos embedding
pos_embed = get_2d_sincos_pos_embed(
self.position_embeddings.shape[-1],
int(self.patch_embeddings.num_patches**0.5),
add_cls_token=True,
)
self.position_embeddings.data.copy_(
torch.from_numpy(pos_embed).float().unsqueeze(0)
)
# initialize patch_embeddings like nn.Linear (instead of nn.Conv2d)
w = self.patch_embeddings.projection.weight.data
torch.nn.init.xavier_uniform_(w.view([w.shape[0], -1]))
# timm's trunc_normal_(std=.02) is effectively normal_(std=0.02) as cutoff is too big (2.)
torch.nn.init.normal_(self.cls_token, std=self.config.initializer_range)
def interpolate_pos_encoding(
self, embeddings: torch.Tensor, height: int, width: int
) -> torch.Tensor:
"""
This method allows to interpolate the pre-trained position encodings, to be able to use the model on higher
resolution images.
Source:
https://github.com/facebookresearch/dino/blob/de9ee3df6cf39fac952ab558447af1fa1365362a/vision_transformer.py#L174
"""
num_patches = embeddings.shape[1] - 1
num_positions = self.position_embeddings.shape[1] - 1
if num_patches == num_positions and height == width:
return self.position_embeddings
class_pos_embed = self.position_embeddings[:, 0, :]
patch_pos_embed = self.position_embeddings[:, 1:, :]
dim = embeddings.shape[-1]
h0 = height // self.config.patch_size
w0 = width // self.config.patch_size
# we add a small number to avoid floating point error in the interpolation
# see discussion at https://github.com/facebookresearch/dino/issues/8
h0, w0 = h0 + 0.1, w0 + 0.1
patch_pos_embed = patch_pos_embed.reshape(
1, int(math.sqrt(num_positions)), int(math.sqrt(num_positions)), dim
)
patch_pos_embed = patch_pos_embed.permute(0, 3, 1, 2)
patch_pos_embed = nn.functional.interpolate(
patch_pos_embed,
scale_factor=(h0 / math.sqrt(num_positions), w0 / math.sqrt(num_positions)),
mode="bicubic",
align_corners=False,
)
if int(h0) != patch_pos_embed.shape[-2] or int(w0) != patch_pos_embed.shape[-1]:
raise ValueError(
"Width or height does not match with the interpolated position embeddings"
)
patch_pos_embed = patch_pos_embed.permute(0, 2, 3, 1).view(1, -1, dim)
return torch.cat((class_pos_embed.unsqueeze(0), patch_pos_embed), dim=1)
def random_masking(self, sequence, noise=None):
"""
Perform per-sample random masking by per-sample shuffling. Per-sample shuffling is done by argsort random
noise.
Args:
sequence (`torch.LongTensor` of shape `(batch_size, sequence_length, dim)`)
noise (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*) which is
mainly used for testing purposes to control randomness and maintain the reproducibility
"""
batch_size, seq_length, dim = sequence.shape
len_keep = int(seq_length * (1 - self.config.mask_ratio))
if noise is None:
noise = torch.rand(
batch_size, seq_length, device=sequence.device
) # noise in [0, 1]
# sort noise for each sample
ids_shuffle = torch.argsort(noise, dim=1).to(
sequence.device
) # ascend: small is keep, large is remove
ids_restore = torch.argsort(ids_shuffle, dim=1).to(sequence.device)
# keep the first subset
ids_keep = ids_shuffle[:, :len_keep]
sequence_unmasked = torch.gather(
sequence, dim=1, index=ids_keep.unsqueeze(-1).repeat(1, 1, dim)
)
# generate the binary mask: 0 is keep, 1 is remove
mask = torch.ones([batch_size, seq_length], device=sequence.device)
mask[:, :len_keep] = 0
# unshuffle to get the binary mask
mask = torch.gather(mask, dim=1, index=ids_restore)
return sequence_unmasked, mask, ids_restore
def forward(self, pixel_values, noise=None, interpolate_pos_encoding: bool = False):
batch_size, num_channels, height, width = pixel_values.shape
embeddings = self.patch_embeddings(
pixel_values, interpolate_pos_encoding=interpolate_pos_encoding
)
if interpolate_pos_encoding:
position_embeddings = self.interpolate_pos_encoding(
embeddings, height, width
)
else:
position_embeddings = self.position_embeddings
# add position embeddings w/o cls token
embeddings = embeddings + position_embeddings[:, 1:, :]
# masking: length -> length * config.mask_ratio
embeddings, mask, ids_restore = self.random_masking(embeddings, noise)
# append cls token
cls_token = self.cls_token + position_embeddings[:, :1, :]
cls_tokens = cls_token.expand(embeddings.shape[0], -1, -1)
embeddings = torch.cat((cls_tokens, embeddings), dim=1)
return embeddings, mask, ids_restore
class ViTMAEPatchEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = (
image_size
if isinstance(image_size, collections.abc.Iterable)
else (image_size, image_size)
)
patch_size = (
patch_size
if isinstance(patch_size, collections.abc.Iterable)
else (patch_size, patch_size)
)
num_patches = (image_size[1] // patch_size[1]) * (
image_size[0] // patch_size[0]
)
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = nn.Conv2d(
num_channels, hidden_size, kernel_size=patch_size, stride=patch_size
)
def forward(self, pixel_values, interpolate_pos_encoding: bool = False):
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if not interpolate_pos_encoding and (
height != self.image_size[0] or width != self.image_size[1]
):
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
x = self.projection(pixel_values).flatten(2).transpose(1, 2)
return x
# Copied from transformers.models.vit.modeling_vit.ViTSelfAttention ViT->ViTMAE
class ViTMAESelfAttention(nn.Module):
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(
config, "embedding_size"
):
raise ValueError(
f"The hidden size {(config.hidden_size,)} is not a multiple of the number of attention "
f"heads {config.num_attention_heads}."
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(
config.hidden_size, self.all_head_size, bias=config.qkv_bias
)
self.key = nn.Linear(
config.hidden_size, self.all_head_size, bias=config.qkv_bias
)
self.value = nn.Linear(
config.hidden_size, self.all_head_size, bias=config.qkv_bias
)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (
self.num_attention_heads,
self.attention_head_size,
)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (
(context_layer, attention_probs) if output_attentions else (context_layer,)
)
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTSdpaSelfAttention ViT->ViTMAE
class ViTMAESdpaSelfAttention(ViTMAESelfAttention):
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__(config)
self.attention_probs_dropout_prob = config.attention_probs_dropout_prob
def forward(
self,
hidden_states,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
context_layer = torch.nn.functional.scaled_dot_product_attention(
query_layer,
key_layer,
value_layer,
head_mask,
self.attention_probs_dropout_prob if self.training else 0.0,
is_causal=False,
scale=None,
)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
return context_layer, None
# Copied from transformers.models.vit.modeling_vit.ViTSelfOutput with ViT->ViTMAE
class ViTMAESelfOutput(nn.Module):
"""
The residual connection is defined in ViTMAELayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(
self, hidden_states: torch.Tensor, input_tensor: torch.Tensor
) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTAttention with ViT->ViTMAE
class ViTMAEAttention(nn.Module):
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__()
self.attention = ViTMAESelfAttention(config)
self.output = ViTMAESelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads: Set[int]) -> None:
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads,
self.attention.num_attention_heads,
self.attention.attention_head_size,
self.pruned_heads,
)
# Prune linear layers
self.attention.query = prune_linear_layer(self.attention.query, index)
self.attention.key = prune_linear_layer(self.attention.key, index)
self.attention.value = prune_linear_layer(self.attention.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.attention.num_attention_heads = self.attention.num_attention_heads - len(
heads
)
self.attention.all_head_size = (
self.attention.attention_head_size * self.attention.num_attention_heads
)
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_outputs = self.attention(hidden_states, head_mask, output_attentions)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[
1:
] # add attentions if we output them
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTSdpaAttention with ViT->ViTMAE
class ViTMAESdpaAttention(ViTMAEAttention):
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__(config)
self.attention = ViTMAESdpaSelfAttention(config)
# Copied from transformers.models.vit.modeling_vit.ViTIntermediate ViT->ViTMAE
class ViTMAEIntermediate(nn.Module):
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTOutput ViT->ViTMAE
class ViTMAEOutput(nn.Module):
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(
self, hidden_states: torch.Tensor, input_tensor: torch.Tensor
) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
VITMAE_ATTENTION_CLASSES = {
"eager": ViTMAEAttention,
"sdpa": ViTMAESdpaAttention,
}
# Copied from transformers.models.vit.modeling_vit.ViTLayer with ViT->ViTMAE,VIT->VITMAE
class ViTMAELayer(nn.Module):
"""This corresponds to the Block class in the timm implementation."""
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = VITMAE_ATTENTION_CLASSES[config._attn_implementation](config)
self.intermediate = ViTMAEIntermediate(config)
self.output = ViTMAEOutput(config)
self.layernorm_before = nn.LayerNorm(
config.hidden_size, eps=config.layer_norm_eps
)
self.layernorm_after = nn.LayerNorm(
config.hidden_size, eps=config.layer_norm_eps
)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_attention_outputs = self.attention(
self.layernorm_before(
hidden_states
), # in ViTMAE, layernorm is applied before self-attention
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[
1:
] # add self attentions if we output attention weights
# first residual connection
hidden_states = attention_output + hidden_states
# in ViTMAE, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_states)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.output(layer_output, hidden_states)
outputs = (layer_output,) + outputs
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTEncoder with ViT->ViTMAE
class ViTMAEEncoder(nn.Module):
def __init__(self, config: ViTMAEConfig) -> None:
super().__init__()
self.config = config
self.layer = nn.ModuleList(
[ViTMAELayer(config) for _ in range(config.num_hidden_layers)]
)
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> Union[tuple, BaseModelOutput]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
layer_head_mask,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states, layer_head_mask, output_attentions
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [hidden_states, all_hidden_states, all_self_attentions]
if v is not None
)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class ViTMAEPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = ViTMAEConfig
base_model_prefix = "vit"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
_supports_sdpa = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
VIT_MAE_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`ViTMAEConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
VIT_MAE_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`ViTImageProcessor.__call__`]
for details.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
interpolate_pos_encoding (`bool`, *optional*, default `False`):
Whether to interpolate the pre-trained position encodings. This is mainly used to use the model on higher
resolution images.
"""
@add_start_docstrings(
"The bare ViTMAE Model transformer outputting raw hidden-states without any specific head on top.",
VIT_MAE_START_DOCSTRING,
)
class ViTMAEModel(ViTMAEPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.embeddings = ViTMAEEmbeddings(config)
self.encoder = ViTMAEEncoder(config)
self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(VIT_MAE_INPUTS_DOCSTRING)
@replace_return_docstrings(
output_type=ViTMAEModelOutput, config_class=_CONFIG_FOR_DOC
)
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
noise: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
interpolate_pos_encoding: bool = False,
) -> Union[Tuple, ViTMAEModelOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, ViTMAEModel
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/vit-mae-base")
>>> model = ViTMAEModel.from_pretrained("facebook/vit-mae-base")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> outputs = model(**inputs)
>>> last_hidden_states = outputs.last_hidden_state
```"""
output_attentions = (
output_attentions
if output_attentions is not None
else self.config.output_attentions
)
output_hidden_states = (
output_hidden_states
if output_hidden_states is not None
else self.config.output_hidden_states
)
return_dict = (
return_dict if return_dict is not None else self.config.use_return_dict
)
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output, mask, ids_restore = self.embeddings(
pixel_values, noise=noise, interpolate_pos_encoding=interpolate_pos_encoding
)
encoder_outputs = self.encoder(
embedding_output,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output)
if not return_dict:
return (sequence_output, mask, ids_restore) + encoder_outputs[1:]
return ViTMAEModelOutput(
last_hidden_state=sequence_output,
mask=mask,
ids_restore=ids_restore,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class GeneralDecoder(nn.Module):
def __init__(self, config, num_patches):
super().__init__()
self.decoder_embed = nn.Linear(
config.hidden_size, config.decoder_hidden_size, bias=True
)
self.decoder_pos_embed = nn.Parameter(
torch.zeros(1, num_patches + 1, config.decoder_hidden_size),
requires_grad=False,
) # fixed sin-cos embedding
decoder_config = deepcopy(config)
decoder_config.hidden_size = config.decoder_hidden_size
decoder_config.num_hidden_layers = config.decoder_num_hidden_layers
decoder_config.num_attention_heads = config.decoder_num_attention_heads
decoder_config.intermediate_size = config.decoder_intermediate_size
self.decoder_layers = nn.ModuleList(
[
ViTMAELayer(decoder_config)
for _ in range(config.decoder_num_hidden_layers)
]
)
self.decoder_norm = nn.LayerNorm(
config.decoder_hidden_size, eps=config.layer_norm_eps
)
self.decoder_pred = nn.Linear(
config.decoder_hidden_size,
config.patch_size**2 * config.num_channels,
bias=True,
) # encoder to decoder
self.gradient_checkpointing = False
self.config = config
self.num_patches = num_patches
self.initialize_weights(num_patches)
self.decoder_config = decoder_config
self.set_trainable_cls_token()
def set_trainable_cls_token(self, tensor: Optional[torch.Tensor] = None):
# register a trainable CLS token
tensor = (
torch.zeros(1, 1, self.decoder_config.hidden_size)
if tensor is None
else tensor
)
self.trainable_cls_token = nn.Parameter(tensor)
def interpolate_pos_encoding(self, embeddings: torch.Tensor) -> torch.Tensor:
"""
This method is a modified version of the interpolation function for ViT-mae model at the deocder, that
allows to interpolate the pre-trained decoder position encodings, to be able to use the model on higher
resolution images.
Source:
https://github.com/facebookresearch/dino/blob/de9ee3df6cf39fac952ab558447af1fa1365362a/vision_transformer.py#L174
"""
# -1 removes the class dimension since we later append it without interpolation
embeddings_positions = embeddings.shape[1] - 1
num_positions = self.decoder_pos_embed.shape[1] - 1
# Separation of class token and patch tokens
class_pos_embed = self.decoder_pos_embed[:, 0, :]
patch_pos_embed = self.decoder_pos_embed[:, 1:, :]
# To retain the final 3d tensor with the required dimensions
dim = self.decoder_pos_embed.shape[-1]
# Increasing a dimension to enable bicubic interpolation
patch_pos_embed = patch_pos_embed.reshape(1, 1, -1, dim)
# permute to bring the dimension to be interpolated, to the last
patch_pos_embed = patch_pos_embed.permute(0, 3, 1, 2)
# Interpolating the decoder position embeddings shape wrt embeddings shape i.e (x).
# 1 keeps the other dimension constant
patch_pos_embed = nn.functional.interpolate(
patch_pos_embed,
scale_factor=(1, embeddings_positions / num_positions),
mode="bicubic",
align_corners=False,
)
# Converting back to the original shape
patch_pos_embed = patch_pos_embed.permute(0, 2, 3, 1).view(1, -1, dim)
# Adding the class token back
return torch.cat((class_pos_embed.unsqueeze(0), patch_pos_embed), dim=1)
def interpolate_latent(self, x: torch.Tensor) -> torch.Tensor:
b, l, c = x.shape
if l == self.num_patches:
return x
# interpolate the latent
# print(f"interpolating latent from {l} to {self.num_patches}, x.shape = {x.shape}")
h, w = int(l**0.5), int(l**0.5)
x = x.reshape(b, h, w, c)
x = x.permute(0, 3, 1, 2)
target_size = (int(self.num_patches**0.5), int(self.num_patches**0.5))
x = nn.functional.interpolate(
x, size=target_size, mode="bilinear", align_corners=False
)
x = x.permute(0, 2, 3, 1).contiguous().view(b, self.num_patches, c)
return x
def initialize_weights(self, num_patches):
# initialize (and freeze) position embeddings by sin-cos embedding
decoder_pos_embed = get_2d_sincos_pos_embed(
self.decoder_pos_embed.shape[-1], int(num_patches**0.5), add_cls_token=True
)
self.decoder_pos_embed.data.copy_(
torch.from_numpy(decoder_pos_embed).float().unsqueeze(0)
)
# timm's trunc_normal_(std=.02) is effectively normal_(std=0.02) as cutoff is too big (2.)
# torch.nn.init.normal_(self.mask_token, std=self.config.initializer_range)
def unpatchify(
self,
patchified_pixel_values,
original_image_size: Optional[Tuple[int, int]] = None,
):
"""
Args:
patchified_pixel_values (`torch.FloatTensor` of shape `(batch_size, num_patches, patch_size**2 * num_channels)`:
Patchified pixel values.
original_image_size (`Tuple[int, int]`, *optional*):
Original image size.
Returns:
`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`:
Pixel values.
"""
patch_size, num_channels = self.config.patch_size, self.config.num_channels
original_image_size = (
original_image_size
if original_image_size is not None
else (self.config.image_size, self.config.image_size)
)
original_height, original_width = original_image_size
num_patches_h = original_height // patch_size
num_patches_w = original_width // patch_size
# sanity check
if num_patches_h * num_patches_w != patchified_pixel_values.shape[1]:
raise ValueError(
f"The number of patches in the patchified pixel values {patchified_pixel_values.shape[1]}, does not match the number of patches on original image {num_patches_h}*{num_patches_w}"
)
# unpatchify
batch_size = patchified_pixel_values.shape[0]
patchified_pixel_values = patchified_pixel_values.reshape(
batch_size,
num_patches_h,
num_patches_w,
patch_size,
patch_size,
num_channels,
)
patchified_pixel_values = torch.einsum(
"nhwpqc->nchpwq", patchified_pixel_values
)
pixel_values = patchified_pixel_values.reshape(
batch_size,
num_channels,
num_patches_h * patch_size,
num_patches_w * patch_size,
)
return pixel_values
def forward(
self,
hidden_states,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
interpolate_pos_encoding: bool = False,
drop_cls_token: bool = False,
):
# embed tokens
x = self.decoder_embed(hidden_states)
# print(f"x.shape = {x.shape}")
# append mask tokens to sequence
# mask_tokens = self.mask_token.repeat(x.shape[0], ids_restore.shape[1] + 1 - x.shape[1], 1)
# append mask tokens to sequence
# x_ = torch.cat([x[:, 1:, :], mask_tokens], dim=1) # no cls token
x_ = x[:, 1:, :] # no cls token
if drop_cls_token:
cls_token = self.trainable_cls_token.expand(x_.shape[0], -1, -1)
# print(f"cls_token.shape = {cls_token.shape}, x_.shape = {x_.shape}")
x_ = self.interpolate_latent(x_)
x = torch.cat([cls_token, x_], dim=1)
else:
raise NotImplementedError("drop_cls_token is not implemented")
x = self.interpolate_latent(x) # interpolate the whole latent
x = torch.cat([x[:, :1, :], x_], dim=1) # append cls token
# add pos embed
if interpolate_pos_encoding:
decoder_pos_embed = self.interpolate_pos_encoding(x)
else:
decoder_pos_embed = self.decoder_pos_embed
hidden_states = x + decoder_pos_embed
# apply Transformer layers (blocks)
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.decoder_layers):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
None,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states, head_mask=None, output_attentions=output_attentions
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
hidden_states = self.decoder_norm(hidden_states)
# predictor projection
logits = self.decoder_pred(hidden_states)
# remove cls token
logits = logits[:, 1:, :]
if not return_dict:
return tuple(
v
for v in [logits, all_hidden_states, all_self_attentions]
if v is not None
)
return ViTMAEDecoderOutput(
logits=logits,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
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