Datasets:

jablonkagroup
/

bio_ner_4

text stringlengths 357 4.7k	input stringlengths 357 4.7k	answer_choices sequencelengths 0 0	correct_output_index float64
Task: Please carry out the NER task for the the text below. Text: For example, although aspirin is a generally well-tolerated pain reliever and is increasingly advocated as a preventative tool for heart attacks and colorectal cancer (Vainio and Miller 2003; Werner et al. 2004), it is also linked to increased risk of gastrointestinal bleeding, cerebral hemorrhage (Werner et al. 2004), and asthma attacks (Jenkins et al. 2004).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: heart,133,138,Anatomy colorectal cancer,151,168,Anatomy gastrointestinal,255,271,Anatomy cerebral,282,290,Anatomy	Task: Please carry out the NER task for the the text below. Text: For example, although aspirin is a generally well-tolerated pain reliever and is increasingly advocated as a preventative tool for heart attacks and colorectal cancer (Vainio and Miller 2003; Werner et al. 2004), it is also linked to increased risk of gastrointestinal bleeding, cerebral hemorrhage (Werner et al. 2004), and asthma attacks (Jenkins et al. 2004).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: heart,133,138,Anatomy colorectal cancer,151,168,Anatomy gastrointestinal,255,271,Anatomy cerebral,282,290,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: Human use of DES was banned in the United States in 1971 after the discovery of high rates of rare, clear-cell adenocarcinomas of the vagina and cervix in DES-exposed daughters (Herbst 1981), and later studies showed elevated breast cancer risk in women who took DES during pregnancy (Titus-Ernstoff et al. 2001).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: adenocarcinomas,113,128,Anatomy vagina,136,142,Anatomy cervix,147,153,Anatomy breast cancer,231,244,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: Human use of DES was banned in the United States in 1971 after the discovery of high rates of rare, clear-cell adenocarcinomas of the vagina and cervix in DES-exposed daughters (Herbst 1981), and later studies showed elevated breast cancer risk in women who took DES during pregnancy (Titus-Ernstoff et al. 2001).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: adenocarcinomas,113,128,Anatomy vagina,136,142,Anatomy cervix,147,153,Anatomy breast cancer,231,244,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Tumor like Astrocytoma, Temporal lobe epilepsy, raised intra cranial tension, drug induced (tricyclics, Propronolol etc;), meningitis and psychotic illness were shown to cause palinacousis and musical hallucinations [ 2, 3].. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: Tumor,0,5,Anatomy Astrocytoma,11,22,Anatomy Temporal lobe,24,37,Anatomy cranial,61,68,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Tumor like Astrocytoma, Temporal lobe epilepsy, raised intra cranial tension, drug induced (tricyclics, Propronolol etc;), meningitis and psychotic illness were shown to cause palinacousis and musical hallucinations [ 2, 3].. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: Tumor,0,5,Anatomy Astrocytoma,11,22,Anatomy Temporal lobe,24,37,Anatomy cranial,61,68,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: In November 2001 he developed cutaneous purple elevated lesions in his lower limbs that were diagnosed as KS by skin biopsy.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: cutaneous purple elevated lesions,30,63,Anatomy lower limbs,71,82,Anatomy KS,106,108,Anatomy skin,112,116,Anatomy	Task: Please carry out the NER task for the the text below. Text: In November 2001 he developed cutaneous purple elevated lesions in his lower limbs that were diagnosed as KS by skin biopsy.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: cutaneous purple elevated lesions,30,63,Anatomy lower limbs,71,82,Anatomy KS,106,108,Anatomy skin,112,116,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Two previous studies have shown that both resting and activated NK cells partially kill autologous DCs, as measured by 3-4-h chromium release assays using high NK/DC ratios (11, 12).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: NK cells,64,72,Anatomy DCs,99,102,Anatomy NK,164,166,Anatomy DC,169,171,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Two previous studies have shown that both resting and activated NK cells partially kill autologous DCs, as measured by 3-4-h chromium release assays using high NK/DC ratios (11, 12).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: NK cells,64,72,Anatomy DCs,99,102,Anatomy NK,164,166,Anatomy DC,169,171,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Culturing activated NK cells with DCs at low NK/DC ratios (1: 5) led to increases in TNF-alpha production, which were augmented dramatically by the addition of suboptimal doses (10 ng/ml) of LPS (Fig. 2 A).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK cells,20,28,Anatomy DCs,34,37,Anatomy NK,45,47,Anatomy DC,50,52,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Culturing activated NK cells with DCs at low NK/DC ratios (1: 5) led to increases in TNF-alpha production, which were augmented dramatically by the addition of suboptimal doses (10 ng/ml) of LPS (Fig. 2 A).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK cells,20,28,Anatomy DCs,34,37,Anatomy NK,45,47,Anatomy DC,50,52,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: Taken together these results indicate that novel mechanisms control cognate interactions between NK cells and DCs and that NK-DC contact has the potential to serve as an important control switch for both amplifying and attenuating innate immune responses in vivo.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK cells,97,105,Anatomy DCs,110,113,Anatomy NK,123,125,Anatomy DC,128,130,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: Taken together these results indicate that novel mechanisms control cognate interactions between NK cells and DCs and that NK-DC contact has the potential to serve as an important control switch for both amplifying and attenuating innate immune responses in vivo.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK cells,97,105,Anatomy DCs,110,113,Anatomy NK,123,125,Anatomy DC,128,130,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: These striking differences between death and survival of DCs upon encountering NK cells correlate precisely with our previous results on TNF-alpha and IL-12 p40 production where increasing numbers of NK cells in the culture shifts the NK effect from potent stimulation to complete inhibition (Fig. 2).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: DCs,57,60,Anatomy NK cells,79,87,Anatomy NK cells,204,212,Anatomy NK,239,241,Anatomy	Task: Please carry out the NER task for the the text below. Text: These striking differences between death and survival of DCs upon encountering NK cells correlate precisely with our previous results on TNF-alpha and IL-12 p40 production where increasing numbers of NK cells in the culture shifts the NK effect from potent stimulation to complete inhibition (Fig. 2).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: DCs,57,60,Anatomy NK cells,79,87,Anatomy NK cells,204,212,Anatomy NK,239,241,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Activated/cultured NK cell-mediated death/survival of DCs and NK-DC conjugate formation.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: NK cell,21,28,Anatomy DCs,60,63,Anatomy NK,68,70,Anatomy DC,73,75,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Activated/cultured NK cell-mediated death/survival of DCs and NK-DC conjugate formation.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: NK cell,21,28,Anatomy DCs,60,63,Anatomy NK,68,70,Anatomy DC,73,75,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: NK cells can both efficiently kill and potently stimulate DCs in our model system and each of these opposing effects appear dependent on cell-to-cell contact.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK cells,0,8,Anatomy DCs,58,61,Anatomy cell,137,141,Anatomy cell,149,153,Anatomy	Task: Please carry out the NER task for the the text below. Text: NK cells can both efficiently kill and potently stimulate DCs in our model system and each of these opposing effects appear dependent on cell-to-cell contact.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK cells,0,8,Anatomy DCs,58,61,Anatomy cell,137,141,Anatomy cell,149,153,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: To quantify these apparent cognate interactions we measured the formation of NK-DC conjugates and compared them to conjugates formed by NK cells and tumor targets.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK,77,79,Anatomy DC,82,84,Anatomy NK cells,138,146,Anatomy tumor,151,156,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: To quantify these apparent cognate interactions we measured the formation of NK-DC conjugates and compared them to conjugates formed by NK cells and tumor targets.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: NK,77,79,Anatomy DC,82,84,Anatomy NK cells,138,146,Anatomy tumor,151,156,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Cultured iDCs were incubated for 48 h, alone (A-C), or with NK cells at the following ratios (NK/DC), 1: 5 (D-F), 1: 1 (G-I), and 5: 1 (J-L).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: iDCs,9,13,Anatomy NK cells,63,71,Anatomy NK,98,100,Anatomy DC,103,105,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Cultured iDCs were incubated for 48 h, alone (A-C), or with NK cells at the following ratios (NK/DC), 1: 5 (D-F), 1: 1 (G-I), and 5: 1 (J-L).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: iDCs,9,13,Anatomy NK cells,63,71,Anatomy NK,98,100,Anatomy DC,103,105,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: Activated/cultured NK cell-induced DC maturation is dependent on cell-to-cell contact and endogenous TNF-alpha production.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: NK cell,21,28,Anatomy DC,39,41,Anatomy cell,69,73,Anatomy cell,81,85,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: Activated/cultured NK cell-induced DC maturation is dependent on cell-to-cell contact and endogenous TNF-alpha production.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: NK cell,21,28,Anatomy DC,39,41,Anatomy cell,69,73,Anatomy cell,81,85,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: Strong similarity between CCN3 and Sonic Hedgehog was observed for the expression pattern in axial structure (notochord and floor plate), in which the left-right asymmetrical pattern in the node area is also conserved (Fig. 1b).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: axial structure,93,108,Anatomy notochord,111,120,Anatomy floor plate,125,136,Anatomy node area,193,202,Anatomy	Task: Please carry out the NER task for the the text below. Text: Strong similarity between CCN3 and Sonic Hedgehog was observed for the expression pattern in axial structure (notochord and floor plate), in which the left-right asymmetrical pattern in the node area is also conserved (Fig. 1b).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: axial structure,93,108,Anatomy notochord,111,120,Anatomy floor plate,125,136,Anatomy node area,193,202,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: In chicken embryo, differentiating endothelial cells in the ventral part of blood islands express CCN3 from the initial stage (Fig. 1e).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: embryo,11,17,Anatomy endothelial cells,35,52,Anatomy ventral part,60,72,Anatomy blood islands,76,89,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: In chicken embryo, differentiating endothelial cells in the ventral part of blood islands express CCN3 from the initial stage (Fig. 1e).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: embryo,11,17,Anatomy endothelial cells,35,52,Anatomy ventral part,60,72,Anatomy blood islands,76,89,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: Individual movement of dorsiflexion, palmar flexion, supination, pronation and radial-ulnar deviation were all significantly better in the dorsiflexed-immobilized group as compared with the palmar flexed immobilized group.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: palmar,37,43,Anatomy radial,79,85,Anatomy ulnar,88,93,Anatomy palmar,194,200,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: Individual movement of dorsiflexion, palmar flexion, supination, pronation and radial-ulnar deviation were all significantly better in the dorsiflexed-immobilized group as compared with the palmar flexed immobilized group.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: palmar,37,43,Anatomy radial,79,85,Anatomy ulnar,88,93,Anatomy palmar,194,200,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Histological evaluation was done by a pathologist who was blinded to the experimental groups, and it was based on the intensity of mononuclear and polymorphonuclear infiltrates in the lamina propria, crypt dilation, cellular destruction and mucosal ulceration.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: lamina propria,184,198,Anatomy crypt,200,205,Anatomy cellular,216,224,Anatomy mucosal,241,248,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Histological evaluation was done by a pathologist who was blinded to the experimental groups, and it was based on the intensity of mononuclear and polymorphonuclear infiltrates in the lamina propria, crypt dilation, cellular destruction and mucosal ulceration.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: lamina propria,184,198,Anatomy crypt,200,205,Anatomy cellular,216,224,Anatomy mucosal,241,248,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: In a first experiment, we searched for differences in glomerular ultrastructure and peripheral neurogenesis between WT and STOP null mice: a first group of 24 mice, 3-to 6-month-old, was used for ultrastructural study of the OBs; a second group of 13 animals was used to analyse proliferation and apoptosis in the OE and VNE on paraffin sections in 3-month-old mice.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: glomerular,54,64,Anatomy OE,320,322,Anatomy VNE,327,330,Anatomy paraffin sections,334,351,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: In a first experiment, we searched for differences in glomerular ultrastructure and peripheral neurogenesis between WT and STOP null mice: a first group of 24 mice, 3-to 6-month-old, was used for ultrastructural study of the OBs; a second group of 13 animals was used to analyse proliferation and apoptosis in the OE and VNE on paraffin sections in 3-month-old mice.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: glomerular,54,64,Anatomy OE,320,322,Anatomy VNE,327,330,Anatomy paraffin sections,334,351,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: Taken together, it seems plausible that motivational reward processes in the caudate enhance preparatory activation in subcortical as well as in cortical nodes of the oculomotor network.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: caudate,77,84,Anatomy subcortical,119,130,Anatomy cortical nodes,145,159,Anatomy oculomotor network,167,185,Anatomy	Task: Please carry out the NER task for the the text below. Text: Taken together, it seems plausible that motivational reward processes in the caudate enhance preparatory activation in subcortical as well as in cortical nodes of the oculomotor network.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: caudate,77,84,Anatomy subcortical,119,130,Anatomy cortical nodes,145,159,Anatomy oculomotor network,167,185,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: These results suggest that reward-processing networks and oculomotor-control networks in the brain are connected in such a way (presumably with the dorsal striatum as a common nexus) that reward anticipation can facilitate oculomotor control and alleviate the deficiencies experienced by healthy seniors and PD patients.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: oculomotor - control networks,60,89,Anatomy brain,97,102,Anatomy dorsal striatum,153,168,Anatomy oculomotor,228,238,Anatomy	Task: Please carry out the NER task for the the text below. Text: These results suggest that reward-processing networks and oculomotor-control networks in the brain are connected in such a way (presumably with the dorsal striatum as a common nexus) that reward anticipation can facilitate oculomotor control and alleviate the deficiencies experienced by healthy seniors and PD patients.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: oculomotor - control networks,60,89,Anatomy brain,97,102,Anatomy dorsal striatum,153,168,Anatomy oculomotor,228,238,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Acute treatment with milnacipran results in increased synaptic concentrations of NE but decreased firing of the NE neurons of the locus coeruleus due to increased stimulation of the somatodendritic alpha2-adrenergic autoreceptors.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: synaptic,54,62,Anatomy NE neurons,112,122,Anatomy locus coeruleus,130,145,Anatomy somatodendritic,182,197,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Acute treatment with milnacipran results in increased synaptic concentrations of NE but decreased firing of the NE neurons of the locus coeruleus due to increased stimulation of the somatodendritic alpha2-adrenergic autoreceptors.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: synaptic,54,62,Anatomy NE neurons,112,122,Anatomy locus coeruleus,130,145,Anatomy somatodendritic,182,197,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Jarred foods with vegetables, meats, and desserts may contain added fat from a variety of sources: vegetable oils, cow milk butter, or cream.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: vegetables,18,28,Anatomy meats,30,35,Anatomy vegetable oils,99,113,Anatomy milk,119,123,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Jarred foods with vegetables, meats, and desserts may contain added fat from a variety of sources: vegetable oils, cow milk butter, or cream.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: vegetables,18,28,Anatomy meats,30,35,Anatomy vegetable oils,99,113,Anatomy milk,119,123,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: LPP (OR = 2.36; p < 0.001) was reported to be highly expressed in small intestinal mucosa and may have a structural role at sites of cell adhesion in maintaining cell shape and motility [ 7].. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: small intestinal mucosa,69,92,Anatomy sites,127,132,Anatomy cell,136,140,Anatomy cell,165,169,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: LPP (OR = 2.36; p < 0.001) was reported to be highly expressed in small intestinal mucosa and may have a structural role at sites of cell adhesion in maintaining cell shape and motility [ 7].. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: small intestinal mucosa,69,92,Anatomy sites,127,132,Anatomy cell,136,140,Anatomy cell,165,169,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: It attenuates the signaling activity of G-proteins, blocking the homing of Intra Epithelial Lymphocytes (IELs), and it is specifically expressed both in human small intestinal mucosa and in murine IELs, key players in the development of human CD villous atrophy [ 7], [ 17].. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: Intra Epithelial Lymphocytes,77,105,Anatomy IELs,108,112,Anatomy small intestinal mucosa,162,185,Anatomy IELs,200,204,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: It attenuates the signaling activity of G-proteins, blocking the homing of Intra Epithelial Lymphocytes (IELs), and it is specifically expressed both in human small intestinal mucosa and in murine IELs, key players in the development of human CD villous atrophy [ 7], [ 17].. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: Intra Epithelial Lymphocytes,77,105,Anatomy IELs,108,112,Anatomy small intestinal mucosa,162,185,Anatomy IELs,200,204,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: The results indicate that tumor tissue of RCC liberates VEGF into the systemic blood flow and that s-VEGF is a possible marker for RCC.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: tumor tissue,26,38,Anatomy RCC,42,45,Anatomy blood,79,84,Anatomy RCC,133,136,Anatomy	Task: Please carry out the NER task for the the text below. Text: The results indicate that tumor tissue of RCC liberates VEGF into the systemic blood flow and that s-VEGF is a possible marker for RCC.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: tumor tissue,26,38,Anatomy RCC,42,45,Anatomy blood,79,84,Anatomy RCC,133,136,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Obstructive nephropathy is one of the most important causes of renal failure in infants and children, while polycystic kidney disease (PKD) is a major cause of renal failure in the adult population.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: renal,63,68,Anatomy polycystic,108,118,Anatomy kidney,119,125,Anatomy renal,161,166,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: Obstructive nephropathy is one of the most important causes of renal failure in infants and children, while polycystic kidney disease (PKD) is a major cause of renal failure in the adult population.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: renal,63,68,Anatomy polycystic,108,118,Anatomy kidney,119,125,Anatomy renal,161,166,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: Ciprofloxacin mediated cell growth inhibition, S/G2-M cell cycle arrest, and apoptosis in a human transitional cell carcinoma of the bladder cell line.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: cell,23,27,Anatomy cell,58,62,Anatomy transitional cell carcinoma,102,129,Anatomy bladder cell line,137,154,Anatomy	Task: Please carry out the NER task for the the text below. Text: Ciprofloxacin mediated cell growth inhibition, S/G2-M cell cycle arrest, and apoptosis in a human transitional cell carcinoma of the bladder cell line.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: cell,23,27,Anatomy cell,58,62,Anatomy transitional cell carcinoma,102,129,Anatomy bladder cell line,137,154,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: Our experimental data confirm previous studies showing the in vitro cell growth inhibition of the transitional cell carcinoma of the bladder cell line HTB9 and further showed the induction of cell cycle arrest at the S/G2-M checkpoints.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: cell,68,72,Anatomy transitional cell carcinoma,98,125,Anatomy bladder cell line HTB9,133,155,Anatomy cell,192,196,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: Our experimental data confirm previous studies showing the in vitro cell growth inhibition of the transitional cell carcinoma of the bladder cell line HTB9 and further showed the induction of cell cycle arrest at the S/G2-M checkpoints.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: cell,68,72,Anatomy transitional cell carcinoma,98,125,Anatomy bladder cell line HTB9,133,155,Anatomy cell,192,196,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: After the completion of skin development, angiogenesis, i. e., the growth of new capillaries from pre-existing blood vessels, is held to occur in the skin only under pathologic conditions.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: skin,24,28,Anatomy capillaries,81,92,Anatomy blood vessels,113,126,Anatomy skin,152,156,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: After the completion of skin development, angiogenesis, i. e., the growth of new capillaries from pre-existing blood vessels, is held to occur in the skin only under pathologic conditions.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: skin,24,28,Anatomy capillaries,81,92,Anatomy blood vessels,113,126,Anatomy skin,152,156,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: This study uses quantitative histomorphometry and double-immunohistologic detection techniques for the demarcation of proliferating endothelial cells, to show that synchronized hair follicle cycling in adolescent C57BL/6 mice is associated with substantial angiogenesis, and that inhibiting angiogenesis in vivo by the intraperitoneal application of a fumagillin derivative retards experimentally induced anagen development in these mice.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: endothelial cells,134,151,Anatomy hair follicle,179,192,Anatomy intraperitoneal,323,338,Anatomy anagen,409,415,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: This study uses quantitative histomorphometry and double-immunohistologic detection techniques for the demarcation of proliferating endothelial cells, to show that synchronized hair follicle cycling in adolescent C57BL/6 mice is associated with substantial angiogenesis, and that inhibiting angiogenesis in vivo by the intraperitoneal application of a fumagillin derivative retards experimentally induced anagen development in these mice.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: endothelial cells,134,151,Anatomy hair follicle,179,192,Anatomy intraperitoneal,323,338,Anatomy anagen,409,415,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: The findings suggest that elevated serum levels of S-100beta, IL-6 and IL-10 reflect concurrent liver or bone metastases in melanoma.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: serum,35,40,Anatomy liver,102,107,Anatomy bone metastases,111,126,Anatomy melanoma,130,138,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: The findings suggest that elevated serum levels of S-100beta, IL-6 and IL-10 reflect concurrent liver or bone metastases in melanoma.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: serum,35,40,Anatomy liver,102,107,Anatomy bone metastases,111,126,Anatomy melanoma,130,138,Anatomy	[]	null
Task: Please carry out the named entity recognition task for the the text below. Text: TEL, a putative tumor suppressor, modulates cell growth and cell morphology of ras-transformed cells while repressing the transcription of stromelysin-1.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: tumor,16,21,Anatomy cell,44,48,Anatomy cell,60,64,Anatomy cells,97,102,Anatomy	Task: Please carry out the named entity recognition task for the the text below. Text: TEL, a putative tumor suppressor, modulates cell growth and cell morphology of ras-transformed cells while repressing the transcription of stromelysin-1.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: tumor,16,21,Anatomy cell,44,48,Anatomy cell,60,64,Anatomy cells,97,102,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: In this study, we sought to investigate in more detail the role of caspase-3 in apoptotic processes in cultured cells and in cell-free extracts of breast cancer cells.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: cells,114,119,Anatomy cell,127,131,Anatomy extracts,139,147,Anatomy breast cancer cells,151,170,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: In this study, we sought to investigate in more detail the role of caspase-3 in apoptotic processes in cultured cells and in cell-free extracts of breast cancer cells.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: cells,114,119,Anatomy cell,127,131,Anatomy extracts,139,147,Anatomy breast cancer cells,151,170,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: We present evidence that apoptosis of caspase-3-deficient MCF-7 breast cancer cells is defective in response to cisplatin treatment, as determined by chromatin condensation, nuclear fragmentation, DNA fragmentation, and release of cytochrome c from the mitochondria.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: caspase - 3 - deficient MCF - 7 breast cancer cells,38,89,Anatomy chromatin,156,165,Anatomy nuclear,180,187,Anatomy mitochondria,259,271,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: We present evidence that apoptosis of caspase-3-deficient MCF-7 breast cancer cells is defective in response to cisplatin treatment, as determined by chromatin condensation, nuclear fragmentation, DNA fragmentation, and release of cytochrome c from the mitochondria.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: caspase - 3 - deficient MCF - 7 breast cancer cells,38,89,Anatomy chromatin,156,165,Anatomy nuclear,180,187,Anatomy mitochondria,259,271,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: Vasodilator-stimulated phosphoprotein (VASP) is highly expressed in vascular endothelial cells, where it has been implicated in cellular reorganization during angiogenesis, as well as in endothelial retraction and changes in vessel permeability.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: vascular endothelial cells,71,97,Anatomy cellular,131,139,Anatomy endothelial,190,201,Anatomy vessel,228,234,Anatomy	Task: Please carry out the NER task for the the text below. Text: Vasodilator-stimulated phosphoprotein (VASP) is highly expressed in vascular endothelial cells, where it has been implicated in cellular reorganization during angiogenesis, as well as in endothelial retraction and changes in vessel permeability.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: vascular endothelial cells,71,97,Anatomy cellular,131,139,Anatomy endothelial,190,201,Anatomy vessel,228,234,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: These data provide a mechanism whereby VASP can influence endothelial migration and organization during capillary formation and modulate vascular permeability via effects on endothelial cell contractility.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: endothelial,58,69,Anatomy capillary,104,113,Anatomy vascular,137,145,Anatomy endothelial cell,174,190,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: These data provide a mechanism whereby VASP can influence endothelial migration and organization during capillary formation and modulate vascular permeability via effects on endothelial cell contractility.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: endothelial,58,69,Anatomy capillary,104,113,Anatomy vascular,137,145,Anatomy endothelial cell,174,190,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: Here we show that IL-12 activates an anti-angiogenic program in Con A-activated mouse spleen cells (activated spc) or human PBMC (activated PBMC).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: spleen cells,92,104,Anatomy spc,117,120,Anatomy PBMC,131,135,Anatomy PBMC,148,152,Anatomy	Task: Please carry out the NER task for the the text below. Text: Here we show that IL-12 activates an anti-angiogenic program in Con A-activated mouse spleen cells (activated spc) or human PBMC (activated PBMC).. Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text. Result: spleen cells,92,104,Anatomy spc,117,120,Anatomy PBMC,131,135,Anatomy PBMC,148,152,Anatomy	[]	null
Task: Please carry out the named entity recognition (NER) task for the the text below. Text: To observe the influence of fungus polysaccharides compounds (FPC) in inducing human liver cancer cell Bel-7402 apoptosis in cell cultivating in vitro, the authors analyzed tumor inhibitive gene P53 expression in Bel-7402 apoptosis by applying double immuno-marker.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: liver cancer cell Bel - 7402,86,114,Anatomy cell,128,132,Anatomy tumor,176,181,Anatomy Bel - 7402,216,226,Anatomy	Task: Please carry out the named entity recognition (NER) task for the the text below. Text: To observe the influence of fungus polysaccharides compounds (FPC) in inducing human liver cancer cell Bel-7402 apoptosis in cell cultivating in vitro, the authors analyzed tumor inhibitive gene P53 expression in Bel-7402 apoptosis by applying double immuno-marker.. Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: liver cancer cell Bel - 7402,86,114,Anatomy cell,128,132,Anatomy tumor,176,181,Anatomy Bel - 7402,216,226,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: Here we studied the effects of cell morphology on the migration of bovine aortic ECs by culturing cells on micropatterned strips of collagen matrix (60-, 30-, and 15-microm wide).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: cell,31,35,Anatomy aortic ECs,74,84,Anatomy cells,98,103,Anatomy matrix,141,147,Anatomy	Task: Please carry out the NER task for the the text below. Text: Here we studied the effects of cell morphology on the migration of bovine aortic ECs by culturing cells on micropatterned strips of collagen matrix (60-, 30-, and 15-microm wide).. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: cell,31,35,Anatomy aortic ECs,74,84,Anatomy cells,98,103,Anatomy matrix,141,147,Anatomy	[]	null
Task: Please carry out the NER task for the the text below. Text: The present study provides direct evidence on the role of cell morphology in EC migration, and will help us to understand the mechanisms of EC migration during angiogenesis and wound healing.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: cell,58,62,Anatomy EC,77,79,Anatomy EC,140,142,Anatomy wound,177,182,Anatomy	Task: Please carry out the NER task for the the text below. Text: The present study provides direct evidence on the role of cell morphology in EC migration, and will help us to understand the mechanisms of EC migration during angiogenesis and wound healing.. Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text. Result: cell,58,62,Anatomy EC,77,79,Anatomy EC,140,142,Anatomy wound,177,182,Anatomy	[]	null