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Task: Please carry out the named entity recognition task for the the text below.
Text: Pleasant Formation (Utica-3, Utica-6, Utica-7, and Utica-8), and two natural-gas wells producing from the Marcellus Shale (Marcellus-4 and Marcellus-5) (Table 1)..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: Utica - 3,21,30,site
Utica - 6,32,41,site
Utica - 7,43,52,site
Utica - 8,58,67,site
Marcellus Shale,117,132,site
Marcellus - 4,135,148,site
Marcellus - 5,153,166,site
|
Task: Please carry out the named entity recognition task for the the text below.
Text: Pleasant Formation (Utica-3, Utica-6, Utica-7, and Utica-8), and two natural-gas wells producing from the Marcellus Shale (Marcellus-4 and Marcellus-5) (Table 1)..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: Utica - 3,21,30,site
Utica - 6,32,41,site
Utica - 7,43,52,site
Utica - 8,58,67,site
Marcellus Shale,117,132,site
Marcellus - 4,135,148,site
Marcellus - 5,153,166,site
|
[] | null |
|
Task: Please carry out the named entity recognition task for the the text below.
Text: Briefly, four active carbonate chimneys were sampled at four distinct sites of the Bay of Prony, including the Bain des Japonais (BdJ), the sites (ST) ST07 (also called Aiguille de Prony), ST09 and ST12..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: chimneys,31,39,site
Bain des Japonais,111,128,site
BdJ,131,134,site
ST07,153,157,site
Aiguille de Prony,172,189,site
ST09,192,196,site
ST12,201,205,site
|
Task: Please carry out the named entity recognition task for the the text below.
Text: Briefly, four active carbonate chimneys were sampled at four distinct sites of the Bay of Prony, including the Bain des Japonais (BdJ), the sites (ST) ST07 (also called Aiguille de Prony), ST09 and ST12..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: chimneys,31,39,site
Bain des Japonais,111,128,site
BdJ,131,134,site
ST07,153,157,site
Aiguille de Prony,172,189,site
ST09,192,196,site
ST12,201,205,site
|
[] | null |
|
Task: Please carry out the NER task for the the text below.
Text: Sample collection Samples of microbial consortia involved in biogas production were collected from (i) the fermenter tank of an agricultural two-stage biogas plant anaerobic digester (AD) in Miedzyrzec Podlaski (Poland) and (ii) an effluent sludge tank from a one-stage wastewater treatment plant anaerobic digester (WD) at MPWIK Pulawy (Poland)..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: biogas,61,67,state
agricultural,129,141,state
two - stage,142,153,state
biogas,154,160,state
anaerobic,167,176,state
one - stage,266,277,state
anaerobic,305,314,state
|
Task: Please carry out the NER task for the the text below.
Text: Sample collection Samples of microbial consortia involved in biogas production were collected from (i) the fermenter tank of an agricultural two-stage biogas plant anaerobic digester (AD) in Miedzyrzec Podlaski (Poland) and (ii) an effluent sludge tank from a one-stage wastewater treatment plant anaerobic digester (WD) at MPWIK Pulawy (Poland)..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: biogas,61,67,state
agricultural,129,141,state
two - stage,142,153,state
biogas,154,160,state
anaerobic,167,176,state
one - stage,266,277,state
anaerobic,305,314,state
|
[] | null |
|
Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: The interdependent responses of plants and ectomycorrhizal fungi to warming and rainfall reduction may lead to a detrimental feedback loop on vegetation productivity and nutrient pool size, which could amplify the adverse impacts of forecasted climate change on ecosystem functioning in EMF-dominated drylands..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: ectomycorrhizal,43,58,state
warming,68,75,state
rainfall reduction,80,98,state
vegetation productivity,142,165,state
nutrient pool size,170,188,state
forecasted climate change,233,258,state
EMF - dominated,287,302,state
|
Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: The interdependent responses of plants and ectomycorrhizal fungi to warming and rainfall reduction may lead to a detrimental feedback loop on vegetation productivity and nutrient pool size, which could amplify the adverse impacts of forecasted climate change on ecosystem functioning in EMF-dominated drylands..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: ectomycorrhizal,43,58,state
warming,68,75,state
rainfall reduction,80,98,state
vegetation productivity,142,165,state
nutrient pool size,170,188,state
forecasted climate change,233,258,state
EMF - dominated,287,302,state
|
[] | null |
|
Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: Biogas volume and composition (CH4, CO2, H2, H2S, O2), pH, ammonia-N, and volatile fatty acids (VFA), were measured as part of the routine process control..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: Biogas,0,6,state
CH4,32,35,state
CO2,37,40,state
H2,42,44,state
O2,51,53,state
pH,56,58,state
ammonia - N,60,71,state
|
Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: Biogas volume and composition (CH4, CO2, H2, H2S, O2), pH, ammonia-N, and volatile fatty acids (VFA), were measured as part of the routine process control..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: Biogas,0,6,state
CH4,32,35,state
CO2,37,40,state
H2,42,44,state
O2,51,53,state
pH,56,58,state
ammonia - N,60,71,state
|
[] | null |
|
Task: Please carry out the NER task for the the text below.
Text: Physicochemical Measurements The concentrations of total nitrogen, total phosphorus (HACH tests), ammonium nitrogen, orthophosphates, and COD (according to APHA 1992), as well as the pH and alkalinity (TitroLine Easy), were measured in the reactor influent and effluent..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: total nitrogen,51,65,state
total phosphorus,67,83,state
ammonium nitrogen,99,116,state
orthophosphates,118,133,state
COD,139,142,state
pH,185,187,state
alkalinity,192,202,state
|
Task: Please carry out the NER task for the the text below.
Text: Physicochemical Measurements The concentrations of total nitrogen, total phosphorus (HACH tests), ammonium nitrogen, orthophosphates, and COD (according to APHA 1992), as well as the pH and alkalinity (TitroLine Easy), were measured in the reactor influent and effluent..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: total nitrogen,51,65,state
total phosphorus,67,83,state
ammonium nitrogen,99,116,state
orthophosphates,118,133,state
COD,139,142,state
pH,185,187,state
alkalinity,192,202,state
|
[] | null |
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Task: Please carry out the NER task for the the text below.
Text: Colonies were sorted into morphological classes of spherical puffs (further divided into radial puffs and non-radial puffs on 23 Mar), fusiform tufts, and mixed morphologies (Figure 1), and either filtered for subsequent extraction of DNA and RNA or used for C and N2 fixation measurements..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: Colonies,0,8,state
puffs,61,66,state
puffs,97,102,state
puffs,120,125,state
tufts,147,152,state
mixed,158,163,state
C and N2 fixation,263,280,state
|
Task: Please carry out the NER task for the the text below.
Text: Colonies were sorted into morphological classes of spherical puffs (further divided into radial puffs and non-radial puffs on 23 Mar), fusiform tufts, and mixed morphologies (Figure 1), and either filtered for subsequent extraction of DNA and RNA or used for C and N2 fixation measurements..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: Colonies,0,8,state
puffs,61,66,state
puffs,97,102,state
puffs,120,125,state
tufts,147,152,state
mixed,158,163,state
C and N2 fixation,263,280,state
|
[] | null |
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Task: Please carry out the NER task for the the text below.
Text: The reduction of nitrate (%) was calculated as: reduction (%) = (nitrite concentration/initial nitrate concentration) 40%+ (initial nitrate concentration-residual nitrate concentration-nitrite concentration) / (initial nitrate concentration) 100%..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: reduction of nitrate,4,24,state
nitrite,66,73,state
initial nitrate,90,105,state
initial nitrate,129,144,state
residual nitrate,161,177,state
nitrite,194,201,state
initial nitrate,221,236,state
|
Task: Please carry out the NER task for the the text below.
Text: The reduction of nitrate (%) was calculated as: reduction (%) = (nitrite concentration/initial nitrate concentration) 40%+ (initial nitrate concentration-residual nitrate concentration-nitrite concentration) / (initial nitrate concentration) 100%..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: reduction of nitrate,4,24,state
nitrite,66,73,state
initial nitrate,90,105,state
initial nitrate,129,144,state
residual nitrate,161,177,state
nitrite,194,201,state
initial nitrate,221,236,state
|
[] | null |
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Task: Please carry out the NER task for the the text below.
Text: High ammonia levels cause a decline in acetate-utilizing methanogens and instead promote the conversion of acetate via a two-step mechanism involving syntrophic acetate oxidation (SAO) to H2 and CO2, followed by hydrogenotrophic methanogenesis..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: ammonia,5,12,state
acetate,39,46,state
acetate,109,116,state
acetate,165,172,state
H2,193,195,state
CO2,200,203,state
hydrogenotrophic methanogenesis,217,248,state
|
Task: Please carry out the NER task for the the text below.
Text: High ammonia levels cause a decline in acetate-utilizing methanogens and instead promote the conversion of acetate via a two-step mechanism involving syntrophic acetate oxidation (SAO) to H2 and CO2, followed by hydrogenotrophic methanogenesis..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: ammonia,5,12,state
acetate,39,46,state
acetate,109,116,state
acetate,165,172,state
H2,193,195,state
CO2,200,203,state
hydrogenotrophic methanogenesis,217,248,state
|
[] | null |
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Task: Please carry out the named entity recognition task for the the text below.
Text: Cases Typical cases of MUO present with signs of brain dysfunction such as seizures or brainstem dysfunction (often disorders of vestibular function), although signs of disease anywhere in the CNS can be caused by MUO..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: Cases,0,5,state
MUO,23,26,state
brain dysfunction,49,66,state
seizures,75,83,state
brainstem dysfunction,87,108,state
disorders of vestibular function,117,149,state
MUO,215,218,state
|
Task: Please carry out the named entity recognition task for the the text below.
Text: Cases Typical cases of MUO present with signs of brain dysfunction such as seizures or brainstem dysfunction (often disorders of vestibular function), although signs of disease anywhere in the CNS can be caused by MUO..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: Cases,0,5,state
MUO,23,26,state
brain dysfunction,49,66,state
seizures,75,83,state
brainstem dysfunction,87,108,state
disorders of vestibular function,117,149,state
MUO,215,218,state
|
[] | null |
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Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: In the genemicrobiota interaction experiment, male C57BL/6J mice first received multiple antibiotics for 3 weeks, and the fecal microbiota of 10-week-old male SIRT3KO or WT littermate mice were then transferred for 2 weeks (once a week) according to a previous study18..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: male,46,50,state
C57BL / 6J,51,61,state
10 - week - old,144,159,state
male,160,164,state
SIRT3KO,165,172,state
WT,176,178,state
littermate,179,189,state
|
Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: In the genemicrobiota interaction experiment, male C57BL/6J mice first received multiple antibiotics for 3 weeks, and the fecal microbiota of 10-week-old male SIRT3KO or WT littermate mice were then transferred for 2 weeks (once a week) according to a previous study18..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: male,46,50,state
C57BL / 6J,51,61,state
10 - week - old,144,159,state
male,160,164,state
SIRT3KO,165,172,state
WT,176,178,state
littermate,179,189,state
|
[] | null |
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Task: Please carry out the named entity recognition task for the the text below.
Text: In the microbiota susceptibility cancer experiment, WT mice and WT mice colonized with 8-week-old male APC min /+ mice microbiota (multiple antibiotics for 3 weeks plus 2 week microbiota adjustment) were exposed to AOM/DSS colon tumor cycles..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: cancer,33,39,state
WT,52,54,state
WT,64,66,state
8 - week - old,87,101,state
male,102,106,state
APC min / +,107,118,state
tumor,237,242,state
|
Task: Please carry out the named entity recognition task for the the text below.
Text: In the microbiota susceptibility cancer experiment, WT mice and WT mice colonized with 8-week-old male APC min /+ mice microbiota (multiple antibiotics for 3 weeks plus 2 week microbiota adjustment) were exposed to AOM/DSS colon tumor cycles..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: cancer,33,39,state
WT,52,54,state
WT,64,66,state
8 - week - old,87,101,state
male,102,106,state
APC min / +,107,118,state
tumor,237,242,state
|
[] | null |
|
Task: Please carry out the named entity recognition task for the the text below.
Text: Part of the experimental field showing 9 out of the 12 opentop chambers To test the growth response of this cultivar to elevated [ CO2], we measured shoot dry weight at anthesis and shoot dry weight, the length and dry weight of ears, weight of grains, and number of grains at maturity..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: growth response,84,99,state
shoot dry weight,149,165,state
anthesis,169,177,state
shoot dry weight,182,198,state
length and dry weight of ears,204,233,state
weight of grains,235,251,state
number of grains at maturity,257,285,state
|
Task: Please carry out the named entity recognition task for the the text below.
Text: Part of the experimental field showing 9 out of the 12 opentop chambers To test the growth response of this cultivar to elevated [ CO2], we measured shoot dry weight at anthesis and shoot dry weight, the length and dry weight of ears, weight of grains, and number of grains at maturity..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: growth response,84,99,state
shoot dry weight,149,165,state
anthesis,169,177,state
shoot dry weight,182,198,state
length and dry weight of ears,204,233,state
weight of grains,235,251,state
number of grains at maturity,257,285,state
|
[] | null |
|
Task: Please carry out the NER task for the the text below.
Text: Bin ID Locus tag Taxonomy Completeness (%) Contamination (%) Genome size (bp) # Scaffolds N50 (scaffolds) GC (%) Predicted genes AMX1 UTAMX1 Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Brocadia 96 1 3, 142, 066 36 137, 788 42.3 2, 724 AMX2 UTAMX2 Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Brocadia 96 2 3, 437, 337 148 32, 519 45.1 3, 064 PLA1 UTPLA1 Bacteria; Planctomycetes 82 2 4, 435, 946 642 8, 518 60.8 4, 062 BCD1 UTBCD1 Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales 96 1 3, 757, 364 58 91, 406 41.0 3, 180 CFX1 UTCFX1 Bacteria; Chloroflexi; Anaerolineae 91 2 2, 777, 515 34 125, 597 52.6 2, 576 CFX2 UTCFX2 Bacteria; Chloroflexi; Anaerolineae 81 5 2, 924, 761 111 48, 865 57.0 2, 622 CFX3 UTCFX3 Bacteria; Chloroflexi; Anaerolineae 82 1 2, 655, 948 281 12, 640 61.3 2, 676 CFX4 UTCFX4 Bacteria; Chloroflexi 81 5 4, 654, 268 672 8, 164 54.8 4, 526 CFX5 UTCFX5 Bacteria; Chloroflexi; Anaerolineae 84 2 3, 776, 973 364 12, 671 62.8 3, 432 CHB1 UTCHB1 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales; Melioribacteraceae 95 0 2, 424, 598 19 211, 700 37.6 2, 083 CHB2 UTCHB2 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae 95 0 4, 062, 427 225 36, 474 33.0 3, 556 CHB3 UTCHB3 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales 83 2 2, 943, 821 349 10, 790 42.1 2, 526 CHB4 * UTCHB4 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales 43 0 1, 189, 945 296 4, 153 34.7 1, 311 CHB5 * UTCHB5 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales 6 2 1, 684, 758 362 4, 608 34.4 1, 621 PRO1 UTPRO1 Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Polyangiaceae 74 2 3, 818, 019 45 114, 904 69.8 3, 321 PRO2 UTPRO2 Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea 68 1 2, 355, 954 380 7, 446 66.9 2, 730 CPR1 UTCPR1 Bacteria; Microgenomates 68 0 892, 243 91 13, 172 37.7 959 pH COD (mgl1) Ammonia (mgNl1) Nitrite (mgNl1) Nitrate (mgNl1) VSS (mgl1) Activity (kg NH4-Nkg1 VSS-day) Filtrate 8.1 53510.8 716.0 69.6 20.8 NA NA PN-effluent 6.8 40512.2 462.0 424.8 46.2 NA NA Anammox-effluent 6.9 35014.7 56.0 28.0 48.2 NA NA Anammox reactor 6.8-8.0 NA NA NA NA 802 0.3090.0094 PN reactor 6.5-8.5 NA NA NA NA 643 0.4190.0265.
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: pH,1968,1970,state
COD,1971,1974,state
Ammonia,1983,1990,state
Nitrite,2000,2007,state
Nitrate,2017,2024,state
VSS,2034,2037,state
VSS,2071,2074,state
|
Task: Please carry out the NER task for the the text below.
Text: Bin ID Locus tag Taxonomy Completeness (%) Contamination (%) Genome size (bp) # Scaffolds N50 (scaffolds) GC (%) Predicted genes AMX1 UTAMX1 Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Brocadia 96 1 3, 142, 066 36 137, 788 42.3 2, 724 AMX2 UTAMX2 Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Brocadia 96 2 3, 437, 337 148 32, 519 45.1 3, 064 PLA1 UTPLA1 Bacteria; Planctomycetes 82 2 4, 435, 946 642 8, 518 60.8 4, 062 BCD1 UTBCD1 Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales 96 1 3, 757, 364 58 91, 406 41.0 3, 180 CFX1 UTCFX1 Bacteria; Chloroflexi; Anaerolineae 91 2 2, 777, 515 34 125, 597 52.6 2, 576 CFX2 UTCFX2 Bacteria; Chloroflexi; Anaerolineae 81 5 2, 924, 761 111 48, 865 57.0 2, 622 CFX3 UTCFX3 Bacteria; Chloroflexi; Anaerolineae 82 1 2, 655, 948 281 12, 640 61.3 2, 676 CFX4 UTCFX4 Bacteria; Chloroflexi 81 5 4, 654, 268 672 8, 164 54.8 4, 526 CFX5 UTCFX5 Bacteria; Chloroflexi; Anaerolineae 84 2 3, 776, 973 364 12, 671 62.8 3, 432 CHB1 UTCHB1 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales; Melioribacteraceae 95 0 2, 424, 598 19 211, 700 37.6 2, 083 CHB2 UTCHB2 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae 95 0 4, 062, 427 225 36, 474 33.0 3, 556 CHB3 UTCHB3 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales 83 2 2, 943, 821 349 10, 790 42.1 2, 526 CHB4 * UTCHB4 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales 43 0 1, 189, 945 296 4, 153 34.7 1, 311 CHB5 * UTCHB5 Bacteria; Chlorobi; Ignavibacteria; Ignavibacteriales 6 2 1, 684, 758 362 4, 608 34.4 1, 621 PRO1 UTPRO1 Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Polyangiaceae 74 2 3, 818, 019 45 114, 904 69.8 3, 321 PRO2 UTPRO2 Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea 68 1 2, 355, 954 380 7, 446 66.9 2, 730 CPR1 UTCPR1 Bacteria; Microgenomates 68 0 892, 243 91 13, 172 37.7 959 pH COD (mgl1) Ammonia (mgNl1) Nitrite (mgNl1) Nitrate (mgNl1) VSS (mgl1) Activity (kg NH4-Nkg1 VSS-day) Filtrate 8.1 53510.8 716.0 69.6 20.8 NA NA PN-effluent 6.8 40512.2 462.0 424.8 46.2 NA NA Anammox-effluent 6.9 35014.7 56.0 28.0 48.2 NA NA Anammox reactor 6.8-8.0 NA NA NA NA 802 0.3090.0094 PN reactor 6.5-8.5 NA NA NA NA 643 0.4190.0265.
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: pH,1968,1970,state
COD,1971,1974,state
Ammonia,1983,1990,state
Nitrite,2000,2007,state
Nitrate,2017,2024,state
VSS,2034,2037,state
VSS,2071,2074,state
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[] | null |
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Task: Please carry out the NER task for the the text below.
Text: Patient materials Fresh frozen lymph node samples from iMCD (n = 11), UCD (n = 12), HHV-8-positive MCD (n = 2), and malignant lymphoma without any known or suspected association or clinical suspicion of HHV-8 infection (n = 6) were collected by either core needle or excisional biopsy at diagnosis or later during flare as part of routine clinical treatment..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: Patient,0,7,state
iMCD,55,59,state
UCD,71,74,state
HHV - 8 - positive MCD,86,108,state
malignant lymphoma,123,141,state
HHV - 8 infection,210,227,state
flare,324,329,state
|
Task: Please carry out the NER task for the the text below.
Text: Patient materials Fresh frozen lymph node samples from iMCD (n = 11), UCD (n = 12), HHV-8-positive MCD (n = 2), and malignant lymphoma without any known or suspected association or clinical suspicion of HHV-8 infection (n = 6) were collected by either core needle or excisional biopsy at diagnosis or later during flare as part of routine clinical treatment..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: Patient,0,7,state
iMCD,55,59,state
UCD,71,74,state
HHV - 8 - positive MCD,86,108,state
malignant lymphoma,123,141,state
HHV - 8 infection,210,227,state
flare,324,329,state
|
[] | null |
|
Task: Please carry out the NER task for the the text below.
Text: Nasopharyngeal sample collection and enrichment protocol Sampling was performed according to each infant's scheduled visits: at birth (within 6 h), at the time of their first PCV vaccination (usually 6 weeks old), at the time of their second dose (usually at 14 weeks old), at the time of the last dose (40 weeks old), and at 12 months..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: infant,98,104,state
at birth,127,135,state
within 6 h,138,148,state
6 weeks old,204,215,state
14 weeks old,264,276,state
40 weeks old,310,322,state
12 months,332,341,state
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Task: Please carry out the NER task for the the text below.
Text: Nasopharyngeal sample collection and enrichment protocol Sampling was performed according to each infant's scheduled visits: at birth (within 6 h), at the time of their first PCV vaccination (usually 6 weeks old), at the time of their second dose (usually at 14 weeks old), at the time of the last dose (40 weeks old), and at 12 months..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: infant,98,104,state
at birth,127,135,state
within 6 h,138,148,state
6 weeks old,204,215,state
14 weeks old,264,276,state
40 weeks old,310,322,state
12 months,332,341,state
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[] | null |
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Task: Please carry out the NER task for the the text below.
Text: For butyric acid degradation, since no genome-scale model of known butyric acid-oxidizing bacteria is available yet, we augmented model iSfu648 by the reactions catalyzed by the butyryl-CoA synthetase and the acetyl-CoA acetyltransferase, added butyric acid uptake via a proton symport, and enforced the excretion of 97.9% of the carbon influx as acetic acid, using the same ratio that the model predicted for growth on propionic acid..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: butyric acid,4,16,treatment
butyric acid,69,81,treatment
butyryl - CoA synthetase,182,206,treatment
acetyl - CoA acetyltransferase,215,245,treatment
butyric acid,253,265,treatment
acetic acid,356,367,treatment
propionic acid,429,443,treatment
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Task: Please carry out the NER task for the the text below.
Text: For butyric acid degradation, since no genome-scale model of known butyric acid-oxidizing bacteria is available yet, we augmented model iSfu648 by the reactions catalyzed by the butyryl-CoA synthetase and the acetyl-CoA acetyltransferase, added butyric acid uptake via a proton symport, and enforced the excretion of 97.9% of the carbon influx as acetic acid, using the same ratio that the model predicted for growth on propionic acid..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: butyric acid,4,16,treatment
butyric acid,69,81,treatment
butyryl - CoA synthetase,182,206,treatment
acetyl - CoA acetyltransferase,215,245,treatment
butyric acid,253,265,treatment
acetic acid,356,367,treatment
propionic acid,429,443,treatment
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[] | null |
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Task: Please carry out the NER task for the the text below.
Text: Forty-nine SD rats were grouped into seven groups comprising a reference group (n = 7) fed a regular (low-fat) chow, a group of AIA rats treated with vehicle (n = 7), a group of AIA rats gavaged with L. casei (n = 7), a group of AIA rats gavaged with MTX (n = 7), a group of AIA rats gavaged with GJK (n = 7) or ZQFNT (n = 7), and a group of AIA rats fed a high-fat diet (D12492) (n = 7)..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: low - fat,106,115,treatment
chow,117,121,treatment
vehicle,156,163,treatment
MTX,259,262,treatment
GJK,306,309,treatment
ZQFNT,322,327,treatment
high - fat diet,368,383,treatment
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Task: Please carry out the NER task for the the text below.
Text: Forty-nine SD rats were grouped into seven groups comprising a reference group (n = 7) fed a regular (low-fat) chow, a group of AIA rats treated with vehicle (n = 7), a group of AIA rats gavaged with L. casei (n = 7), a group of AIA rats gavaged with MTX (n = 7), a group of AIA rats gavaged with GJK (n = 7) or ZQFNT (n = 7), and a group of AIA rats fed a high-fat diet (D12492) (n = 7)..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type with a high probability of being in the text.
Result: low - fat,106,115,treatment
chow,117,121,treatment
vehicle,156,163,treatment
MTX,259,262,treatment
GJK,306,309,treatment
ZQFNT,322,327,treatment
high - fat diet,368,383,treatment
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[] | null |
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Task: Please carry out the named entity recognition task for the the text below.
Text: The composition of the medium for the DHS reactor was as follows (l1): 5.9mg sodium acetate, 7.3mg sodium propionate, 8.7mg sodium butyrate, 10mg yeast extract, 0.53g NH4Cl, 0.1g KH2PO4, 4g MgCl26H2O, 1g CaCl22H2O, 20g NaCl, 2g NaHCO3, 0.1g Na2S9H2O, 2ml Ti (III)-nitrilotriacetate, 1ml trace element solution75, 1ml vitamin solution76, and 1ml resazurin solution (1mgml1)..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: 10mg yeast extract,145,163,treatment
4g MgCl26H2O,193,205,treatment
1g CaCl22H2O,207,219,treatment
20g NaCl,221,229,treatment
2g NaHCO3,231,240,treatment
trace element,297,310,treatment
vitamin,327,334,treatment
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Task: Please carry out the named entity recognition task for the the text below.
Text: The composition of the medium for the DHS reactor was as follows (l1): 5.9mg sodium acetate, 7.3mg sodium propionate, 8.7mg sodium butyrate, 10mg yeast extract, 0.53g NH4Cl, 0.1g KH2PO4, 4g MgCl26H2O, 1g CaCl22H2O, 20g NaCl, 2g NaHCO3, 0.1g Na2S9H2O, 2ml Ti (III)-nitrilotriacetate, 1ml trace element solution75, 1ml vitamin solution76, and 1ml resazurin solution (1mgml1)..
Constrain: Please, list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: 10mg yeast extract,145,163,treatment
4g MgCl26H2O,193,205,treatment
1g CaCl22H2O,207,219,treatment
20g NaCl,221,229,treatment
2g NaHCO3,231,240,treatment
trace element,297,310,treatment
vitamin,327,334,treatment
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[] | null |
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Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: A starch, glucose and volatile fatty acids (VFA) mixture (acetate, propionate and butyrate) was fed for 55days; after that, the feeding continued with a cellulose and xylan mixture till day 190..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: starch,2,8,treatment
glucose,10,17,treatment
acetate,60,67,treatment
propionate,69,79,treatment
butyrate,84,92,treatment
cellulose,155,164,treatment
xylan,169,174,treatment
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Task: Please carry out the named entity recognition (NER) task for the the text below.
Text: A starch, glucose and volatile fatty acids (VFA) mixture (acetate, propionate and butyrate) was fed for 55days; after that, the feeding continued with a cellulose and xylan mixture till day 190..
Constrain: Please, only list the entities in the form NER entity, span start, span end, and type in separate lines with a high probability of being in the text.
Result: starch,2,8,treatment
glucose,10,17,treatment
acetate,60,67,treatment
propionate,69,79,treatment
butyrate,84,92,treatment
cellulose,155,164,treatment
xylan,169,174,treatment
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[] | null |
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