chembl_aqsol / README.md
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metadata
dataset_info:
  features:
    - name: smiles
      dtype: string
    - name: logS
      dtype: float64
    - name: molecule_chembl_id
      dtype: string
    - name: assay_description
      dtype: string
    - name: MW
      dtype: float64
    - name: LogP
      dtype: float64
    - name: TPSA
      dtype: float64
    - name: Complexity
      dtype: float64
  splits:
    - name: train
      num_bytes: 2499984.4224180733
      num_examples: 12889
    - name: test
      num_bytes: 625141.5775819265
      num_examples: 3223
  download_size: 1449047
  dataset_size: 3125126
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/train-*
      - split: test
        path: data/test-*
tags:
  - chemistry
size_categories:
  - 10K<n<100K
task_categories:
  - tabular-regression
license: cc-by-sa-3.0

ChEMBL Aqueous Solubility Dataset

The data was extracted from ChEMBL's Activity Database. It has been:

  • Filtered to remove non Aqueous Solubility Entries
  • Standardized various Aqueous Solubility Units (e.g., nM, μg/mL, μg·mL−¹) to LogS.
  • Refined using established datasets from previous research.
Column Name Description
smiles Simplified Molecular Input Line Entry System (SMILES) representation of chemical compounds.
logS Logarithm of the solubility of a compound in water.
chembl_id Unique identifier for the compound in the ChEMBL database.
MW Molecular weight of the compound, representing the sum of atomic masses in Daltons (g/mol).
LogP Partition coefficient (LogP) of the compound, indicating its lipophilicity or hydrophobicity.
TPSA Topological polar surface area of the compound, reflecting the molecule's polarity and transportability.
Complexity Molecular complexity, measured as the fraction of sp³ hybridized carbons in the molecule (0–1 range).