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macwiatrak
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operon-identification-long-read-rna-sequencing-dna

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strain_name
string
contig_name
list
gene_name
list
locus_tag
list
start
list
end
list
strand
list
protein_id
list
operon_prot_indices
list
dna_sequence
list
Escherichia coli
[ "NZ_CP026085.1" ]
[["dnaA","dnaN","recF","gyrB","yidB","yidA","yidX","dgoR","dgoK","dgoA","dgoD","dgoT","cbrA","yidR",(...TRUNCATED)
[["C1467_RS00005","C1467_RS00010","C1467_RS00015","C1467_RS00020","C1467_RS00025","C1467_RS00030","C(...TRUNCATED)
[[100,1508,2608,3710,6364,6877,7735,8669,9355,10217,10831,12054,13388,14553,15769,16407,16932,17557,(...TRUNCATED)
[[1504,2609,3682,6125,6763,7690,8392,9359,10234,10835,11980,13392,14453,15768,16102,16821,17361,1921(...TRUNCATED)
[[1,1,1,1,1,1,-1,1,1,1,1,1,-1,1,-1,1,1,1,-1,1,-1,1,1,-1,1,1,1,-1,1,-1,1,1,1,1,1,1,1,-1,1,1,1,-1,1,-1(...TRUNCATED)
[["WP_000059111.1","WP_000673464.1","WP_000060112.1","WP_000072067.1","WP_000522208.1","WP_000985549(...TRUNCATED)
[[[7,8],[76,77],[158,159],[357,358],[496,497],[515,516],[521,522],[732,733],[815,816],[927,928],[977(...TRUNCATED)
["TTCGTGCGTCACCCTCAAGCAGGGTCTTTTCGACGTACGTCAACAATCATGAATGTTTCAGCCTTAGTCATTATCGACTTTTGTTCGAGTGGAGTCCG(...TRUNCATED)
Mycobacterium tuberculosis H37Rv
[ "NC_000962.3" ]
[["dnaA","dnaN","recF",null,"gyrB","gyrA",null,null,"ppiA",null,null,null,"trpG","pknB","pknA","pbpA(...TRUNCATED)
[["Rv0001","Rv0002","Rv0003","Rv0004","Rv0005","Rv0006","Rv0007","Rv0008c","Rv0009","Rv0010c","Rv001(...TRUNCATED)
[[0,2051,3279,4433,5239,7301,9913,11873,12467,13132,13713,14088,14913,15589,17466,18758,20230,21636,(...TRUNCATED)
[[1524,3260,4437,4997,7267,9818,10828,12311,13016,13558,13995,14877,15612,17470,18762,20234,21640,23(...TRUNCATED)
[[1,1,1,1,1,1,1,-1,1,-1,-1,1,1,-1,-1,-1,-1,-1,-1,-1,-1,-1,1,1,1,1,1,1,1,1,1,1,1,1,-1,-1,1,-1,-1,1,-1(...TRUNCATED)
[["NP_214515.1","NP_214516.1","NP_214517.1","NP_214518.1","NP_214519.2","NP_214520.1","NP_214521.1",(...TRUNCATED)
[[[111,112],[382,383],[390,391],[422,423],[456,457],[496,497],[845,846],[1046,1047],[1165,1166],[122(...TRUNCATED)
["TTGACCGATGACCCCGGTTCAGGCTTCACCACAGTGTGGAACGCGGTCGTCTCCGAACTTAACGGCGACCCTAAGGTTGACGACGGACCCAGCAGTGA(...TRUNCATED)
Mycobacteroides abscessus ATCC 19977
[ "NC_010397.1", "NC_010394.1" ]
[["dnaA",null,"dnaN","gnd","recF",null,"gyrB",null,null,null,null,null,null,null,null,null,null,null(...TRUNCATED)
[["MAB_RS00150","MAB_RS00155","MAB_RS00160","MAB_RS00165","MAB_RS00170","MAB_RS00175","MAB_RS00180",(...TRUNCATED)
[[0,1552,2168,3418,4331,5472,6248,8408,9619,9896,10484,11716,12324,13079,14059,14300,14597,16689,172(...TRUNCATED)
[[1476,1747,3368,4312,5480,6024,8276,9620,9847,10436,11699,12328,12723,13916,14284,14588,16145,17262(...TRUNCATED)
[[1,-1,1,1,1,1,1,1,1,1,-1,-1,-1,-1,1,1,1,1,-1,1,1,-1,1,-1,1,1,-1,-1,-1,1,1,1,-1,-1,-1,-1,-1,-1,-1,1,(...TRUNCATED)
[["WP_005079124.1","WP_005095934.1","WP_005064525.1","WP_005079128.1","WP_005112812.1","WP_005087667(...TRUNCATED)
[[[48,49],[225,226],[289,290,291],[327,328],[730,731],[836,837],[1178,1179],[1196,1197],[1359,1360],(...TRUNCATED)
["TTGACTGACGAACTGAATTCCCAGTTCACGGCGGTATGGAATACCGTCGTCGCAGAGCTCAACGGTGACGACAATCAATATCTGTCGAGCTTCCCGCC(...TRUNCATED)
Pseudomonas aeruginosa PAO1
[ "NC_002516.2" ]
[["dnaA","dnaN","recF","gyrB","lptA",null,null,"glyS","glyQ","tag",null,null,null,null,null,"trkA",n(...TRUNCATED)
[["PA0001","PA0002","PA0003","PA0004","PA0005","PA0006","PA0007","PA0008","PA0009","PA0010","PA0011"(...TRUNCATED)
[[482,2055,3168,4274,7017,7802,8670,10433,12487,13539,14234,15206,15619,16334,16899,17365,18766,2006(...TRUNCATED)
[[2027,3159,4278,6695,7791,8339,10377,12488,13435,14091,15122,15473,16273,16607,17217,18739,20071,21(...TRUNCATED)
[[1,1,1,1,-1,-1,1,-1,-1,1,1,1,1,-1,-1,-1,-1,-1,-1,1,1,1,-1,1,1,1,1,1,-1,-1,-1,1,1,-1,-1,-1,-1,1,1,1,(...TRUNCATED)
[["NP_064721.1","NP_064722.1","NP_064723.1","NP_064724.1","NP_064725.1","NP_064726.1","NP_064727.1",(...TRUNCATED)
[[[484,485],[604,605],[640,641],[1059,1060],[1066,1067],[1183,1184],[1190,1191],[1623,1624],[1650,16(...TRUNCATED)
["TTTAAAGAGACCGGCGATTCTAGTGAAATCGAACGGGCAGGTCAATTTCCAACCAGCGATGACGTAATAGATAGATACAAGGAAGTCATTTTTCTTTT(...TRUNCATED)
Staphylococcus aureus subsp. aureus NCTC 8325
[ "NC_007795.1" ]
[["dnaA",null,null,"recF",null,null,null,null,null,null,null,null,null,null,"rplI",null,null,null,nu(...TRUNCATED)
[["SAOUHSC_00001","SAOUHSC_00002","SAOUHSC_00003","SAOUHSC_00004","SAOUHSC_00005","SAOUHSC_00006","S(...TRUNCATED)
[[516,2155,3669,3911,5033,7004,9754,10892,12785,14721,15413,16105,17364,18317,20281,20765,22443,2493(...TRUNCATED)
[[1878,3289,3915,5024,6968,9668,10456,12407,14072,15417,15743,17074,18303,20285,20734,22166,23727,25(...TRUNCATED)
[[1,1,1,1,1,1,-1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,-1,1,-1,1,1,-1,-1,-1,-1,1,1,1,-1,-1,1,1,-1,-1,1,-1,(...TRUNCATED)
[["YP_498609.1","YP_498610.1","YP_498611.1","YP_498612.1","YP_498613.1","YP_498614.1","YP_498615.1",(...TRUNCATED)
[[[50,51],[130,131],[161,162],[188,189],[209,210],[371,372,373],[388,389],[445,446],[455,456],[457,4(...TRUNCATED)
["CGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTCGAACACCTT(...TRUNCATED)
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Size of downloaded dataset files:
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Collection including macwiatrak/operon-identification-long-read-rna-sequencing-dna