Datasets:
songlab
/
TraitGym

Dataset card Data Studio Files
xet
Community
1
chrom
stringclasses
22 values
pos
int64
99.5k
249M
ref
stringclasses
4 values
alt
stringclasses
4 values
pip
float64
0
1
trait
stringclasses
259 values
label
bool
2 classes
maf
float64
0
0.5
ld_score
float64
1.53
628
consequence
stringclasses
16 values
tss_dist
int64
0
1.58M
match_group
stringlengths
5
37
1
14,647,875
A
G
0.000741
false
0.26377
91.876
dELS
49,157
dELS_15
1
14,849,995
T
C
0
false
0.075123
44.62
intron_variant
74,134
intron_variant_10
1
14,997,046
T
C
0
false
0.28544
41.853
dELS_flank
51,126
dELS_flank_0
1
15,243,025
T
G
0
false
0.13081
47.898
dELS_flank
4,197
dELS_flank_10
1
15,247,193
A
G
0.001678
false
0.39316
131.58
PLS
29
PLS_3
1
15,247,215
C
A
0.00161
false
0.39314
131.58
PLS
7
PLS_3
1
15,358,866
G
A
0
false
0.48369
30.827
dELS
13,434
dELS_9
1
15,502,099
C
G
0
false
0.028341
84.944
dELS_flank
4,952
dELS_flank_1
1
16,015,154
C
G
0
false
0.081398
64.209
3_prime_UTR_variant
2,670
3_prime_UTR_variant_2
1
16,091,497
C
T
0.003317
false
0.41757
178.74
dELS
17,845
dELS_8
1
16,178,825
A
G
0.988178
GGT
true
0.41997
186.1
dELS
22,755
dELS_8
1
16,187,874
A
G
0
false
0.094983
54.653
dELS
18,651
dELS_5
1
16,450,309
C
T
0
false
0.41379
107.58
non_coding_transcript_exon_variant
9,572
non_coding_transcript_exon_variant_2
1
16,450,373
G
A
0
false
0.41378
107.59
non_coding_transcript_exon_variant
9,636
non_coding_transcript_exon_variant_2
1
16,451,770
G
T
0
false
0.41381
107.61
non_coding_transcript_exon_variant
11,033
non_coding_transcript_exon_variant_2
1
16,998,263
G
C
0
false
0.14117
46.015
dELS_flank
1,979
dELS_flank_10
1
17,207,181
G
A
0.001119
false
0.27095
48.008
dELS
2,052
dELS_3
1
17,207,189
G
A
0.000774
false
0.26967
48.257
dELS
2,060
dELS_3
1
17,261,023
T
C
0
false
0.008337
5.6543
intron_variant
11,924
intron_variant_7
1
17,265,255
C
T
0
false
0.090727
65.903
dELS
16,156
dELS_14
1
17,423,008
G
A
0.001954
false
0.36411
161.1
intron_variant
15,552
intron_variant_12
1
17,523,506
G
A
0
false
0.39785
87.111
dELS
16,191
dELS_10
1
17,560,792
T
C
0
false
0.14675
25.221
dELS
19,760
dELS_16
1
17,560,950
C
T
0
false
0.14665
25.223
dELS
19,602
dELS_16
1
17,565,099
C
T
0
false
0.062466
50.887
dELS
15,453
dELS_4
1
17,601,764
A
G
0
false
0.22455
13.925
dELS
16,551
dELS_6
1
18,028,918
T
C
0
false
0.07007
46.342
intron_variant
78,879
intron_variant_10
1
18,091,949
C
T
0
false
0.14868
27.681
dELS
15,848
dELS_16
1
18,148,933
T
G
0
false
0.28432
40.183
dELS_flank
41,134
dELS_flank_0
1
18,298,526
T
C
0
false
0.20647
31.765
dELS
182,403
dELS_29
1
18,645,140
G
C
0
false
0.38166
84.201
dELS
13,615
dELS_10
1
18,659,133
G
A
0
false
0.009598
15.897
dELS_flank
27,608
dELS_flank_13
1
18,904,636
G
A
0
false
0.050461
27.793
3_prime_UTR_variant
1,911
3_prime_UTR_variant_3
1
19,052,883
C
T
0
false
0.001117
6.9115
intergenic_variant
29,356
intergenic_variant_3
1
19,251,698
G
A
0
false
0.4116
133.09
PLS
106
PLS_3
1
19,725,880
C
T
0
false
0.36736
28.684
dELS
61,004
dELS_0
1
19,864,451
A
T
0
false
0.38112
91.488
dELS
17,943
dELS_10
1
19,917,340
G
T
0.002292
false
0.3323
71.266
intergenic_variant
6,276
intergenic_variant_5
1
20,051,858
G
A
0
false
0.050879
67.803
intron_variant
18,335
intron_variant_8
1
20,194,239
T
C
0
false
0.22867
58.835
3_prime_UTR_variant
7,720
3_prime_UTR_variant_1
1
20,271,858
C
T
0
false
0.35967
103.47
pELS
19,016
pELS_6
1
20,303,131
C
T
0
false
0.11247
71.291
5_prime_UTR_variant
49
5_prime_UTR_variant_2
1
20,373,372
T
A
0
false
0.004725
17.087
non_coding_transcript_exon_variant
70,290
non_coding_transcript_exon_variant_6
1
20,526,481
G
T
0
false
0.051092
49.614
non_coding_transcript_exon_variant
18,329
non_coding_transcript_exon_variant_1
1
20,557,029
G
C
0
false
0.33089
66.531
intergenic_variant
4,455
intergenic_variant_5
1
21,302,954
A
C
0.00256
false
0.43681
95.755
dELS
3,954
dELS_26
1
21,417,324
G
A
0
false
0.043774
48.139
non_coding_transcript_exon_variant
22,803
non_coding_transcript_exon_variant_1
1
21,439,960
A
C
0
false
0.40782
116.39
PLS
167
PLS_3
1
21,493,549
A
G
0.999998
Ca
true
0.38873
91.82
intergenic_variant
15,873
intergenic_variant_0
1
21,571,283
A
G
0.000533
false
0.42581
68.188
intron_variant
979
intron_variant_1
1
21,577,881
A
C
0
false
0.2139
57.253
3_prime_UTR_variant
7,577
3_prime_UTR_variant_1
1
21,856,349
G
A
0
false
0.058403
53.871
dELS
16,027
dELS_4
1
22,045,218
G
T
0
false
0.12595
127.96
dELS
7,408
dELS_11
1
22,076,608
A
G
0
false
0.001791
48.464
5_prime_UTR_variant
273
5_prime_UTR_variant_1
1
22,447,507
G
A
0
false
0.23639
43.032
dELS_flank
4,343
dELS_flank_14
1
22,524,719
C
T
0
false
0.01002
27.329
intron_variant
38,769
intron_variant_9
1
22,583,224
A
G
0
false
0.22412
77.325
dELS
19,659
dELS_25
1
22,583,376
C
T
0
false
0.097231
53.363
dELS
19,811
dELS_5
1
22,764,420
C
T
0
false
0.010742
5.4474
intron_variant
10,757
intron_variant_7
1
22,776,363
G
A
0
false
0.17935
45.362
pELS
1,184
pELS_4
1
22,778,275
C
T
0
false
0.13833
47.742
dELS_flank
3,096
dELS_flank_10
1
23,246,910
G
A
0
false
0.001451
6.8685
intergenic_variant
29,407
intergenic_variant_3
1
23,383,982
C
T
0.965786
HDLC
true
0.49916
132.63
3_prime_UTR_variant
14,145
3_prime_UTR_variant_0
1
23,559,582
T
C
0.008327
false
0.44096
49.193
PLS
80
PLS_4
1
23,643,640
C
T
0
false
0.28617
40.919
dELS_flank
48,101
dELS_flank_0
1
23,651,381
T
C
0
false
0.018292
49.125
dELS
40,360
dELS_23
1
23,651,724
G
T
0
false
0.018283
49.136
dELS
40,017
dELS_23
1
24,100,276
C
G
0.00122
false
0.4643
44.414
dELS
11,858
dELS_24
1
24,203,826
G
A
0
false
0.11006
16.808
dELS_flank
4,267
dELS_flank_9
1
24,228,561
A
T
0
false
0.011902
43.492
dELS
29,002
dELS_20
1
24,536,153
T
G
0
false
0.49923
143.94
3_prime_UTR_variant
19,933
3_prime_UTR_variant_0
1
24,536,159
A
G
0
false
0.49919
143.94
3_prime_UTR_variant
19,927
3_prime_UTR_variant_0
1
24,914,625
A
G
0.999468
FEV1FVC
true
0.48686
31.461
dELS
15,650
dELS_9
1
24,965,206
C
T
1
AG,Alb,Balding_Type4
true
0.014671
28.562
PLS
195
PLS_0
1
25,196,976
C
G
0
false
0.33654
30.697
dELS_flank
35,509
dELS_flank_5
1
25,351,114
G
A
1
HbA1c
true
0.13313
64.255
intron_variant
12,779
intron_variant_0
1
25,430,243
G
T
0.000729
false
0.0128
14.796
pELS
50
pELS_1
1
25,617,022
G
A
0
false
0.063069
19.043
5_prime_UTR_variant
230
5_prime_UTR_variant_5
1
25,699,325
G
A
0
false
0.039838
49.712
dELS_flank
10,276
dELS_flank_11
1
25,727,467
C
T
0
false
0.15272
28.886
dELS
17,864
dELS_16
1
25,905,700
G
A
0
false
0.018648
16.047
pELS
210
pELS_1
1
26,046,114
G
C
0.008488
false
0.1058
89.165
5_prime_UTR_variant
0
5_prime_UTR_variant_2
1
26,159,026
G
C
0
false
0.31212
111.64
PLS
52
PLS_1
1
26,417,412
C
T
0
false
0.35579
84.566
dELS_flank
6,594
dELS_flank_8
1
26,501,735
A
G
0
false
0.008236
42.795
dELS
28,025
dELS_20
1
26,577,079
T
C
0
false
0.39156
92.429
intergenic_variant
4,808
intergenic_variant_0
1
26,695,422
G
C
0.999566
ALT,SHBG,TG,UA
true
0.023374
84.56
PLS_flank
592
PLS_flank_0
1
26,853,597
A
C
0.911216
ALP
true
0.023521
84.264
dELS_flank
3,234
dELS_flank_1
1
26,998,576
G
A
0.002547
false
0.020288
82.591
dELS_flank
4,256
dELS_flank_1
1
27,491,180
A
C
0
false
0.17992
41.414
pELS
1,012
pELS_4
1
27,576,980
G
A
0.001392
false
0.008055
42.654
dELS
26,498
dELS_20
1
27,605,187
G
A
0
false
0.18867
37.437
pELS
1,009
pELS_4
1
27,935,898
A
T
0
false
0.27857
153.87
pELS
787
pELS_0
1
28,056,556
A
G
0.001859
false
0.27291
153.6
pELS
1,530
pELS_0
1
28,059,212
C
T
0.002821
false
0.27593
152.41
pELS
1,124
pELS_0
1
28,599,026
C
T
0
false
0.18859
294.39
dELS_flank
6,760
dELS_flank_2
1
29,099,321
G
A
0.001385
false
0.40881
188.23
dELS
23,179
dELS_8
1
29,159,616
C
T
0.981676
Ht
true
0.053917
46.635
non_coding_transcript_exon_variant
22,265
non_coding_transcript_exon_variant_1
1
29,395,382
C
T
0
false
0.26073
27.62
dELS
158,742
dELS_27
1
29,745,193
G
A
0
false
0.41739
81.653
dELS
508,553
dELS_12