Datasets:

songlab
/

clinvar_vs_benign

Modalities:

Text

Formats:

Size:

Libraries:

License:

Dataset card Data Studio Files Files and versions

xet

Community

Dataset Viewer

Auto-converted to Parquet Duplicate

Split (1)

test · 50.2k rows

chrom stringclasses 24 values	pos int64 45.7k 248M	ref stringclasses 4 values	alt stringclasses 4 values	label stringclasses 2 values	id stringlengths 1 7	review_status stringclasses 5 values	consequence stringclasses 77 values
1	930,165	G	A	Benign	1164676	criteria_provided,_single_submitter	missense_variant
1	930,204	G	A	Benign	1170208	criteria_provided,_single_submitter	missense_variant
1	930,285	G	A	Benign	1165489	criteria_provided,_single_submitter	missense_variant
1	930,314	C	T	Benign	1170010	criteria_provided,_single_submitter	missense_variant
1	935,779	G	A	Benign	1167937	criteria_provided,_single_submitter	missense_variant
1	939,429	G	C	Benign	1167351	criteria_provided,_single_submitter	intron_variant,missense_variant
1	942,451	T	C	Benign	1166513	criteria_provided,_single_submitter	missense_variant
1	942,930	T	C	Benign	1169836	criteria_provided,_single_submitter	missense_variant
1	942,945	C	T	Benign	1170437	criteria_provided,_single_submitter	missense_variant
1	942,951	C	T	Benign	1170505	criteria_provided,_single_submitter	missense_variant
1	944,001	C	T	Benign	1164573	criteria_provided,_single_submitter	missense_variant
1	944,004	G	A	Benign	1164106	criteria_provided,_single_submitter	missense_variant
1	944,029	C	G	Benign	1168053	criteria_provided,_single_submitter	missense_variant
1	944,101	G	C	Benign	780745	criteria_provided,_single_submitter	missense_variant
1	966,542	G	A	Benign	782833	criteria_provided,_single_submitter	missense_variant
1	966,543	C	A	Benign	782834	criteria_provided,_single_submitter	missense_variant
1	972,895	G	A	Benign	770481	criteria_provided,_single_submitter	missense_variant
1	973,842	G	A	Benign	791106	criteria_provided,_single_submitter	missense_variant
1	976,215	A	G	Pathogenic	1320032	no_assertion_criteria_provided	missense_variant
1	1,014,042	G	A	Benign	475283	criteria_provided,_single_submitter	missense_variant
1	1,014,228	G	A	Benign	402986	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,020,183	G	C	Benign	387476	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,041,583	A	G	Benign	128291	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,044,368	A	T	Benign	128294	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,045,751	A	G	Benign	263173	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,047,342	A	G	Benign	128299	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,048,126	C	T	Benign	128304	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,048,900	G	A	Benign	703974	criteria_provided,_single_submitter	missense_variant
1	1,050,446	G	A	Benign	128312	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,050,449	G	A	Pathogenic	1284257	no_assertion_criteria_provided	missense_variant
1	1,050,575	G	C	Pathogenic	18241	no_assertion_criteria_provided	missense_variant
1	1,213,738	G	A	Pathogenic	96692	no_assertion_criteria_provided	missense_variant
1	1,214,100	G	A	Benign	474794	criteria_provided,_single_submitter	missense_variant
1	1,232,279	A	G	Pathogenic	60484	criteria_provided,_multiple_submitters,_no_conflicts	initiatior_codon_variant,missense_variant
1	1,232,280	T	C	Pathogenic	1452181	criteria_provided,_single_submitter	initiatior_codon_variant,missense_variant
1	1,232,281	G	A	Pathogenic	2151860	criteria_provided,_single_submitter	initiatior_codon_variant,missense_variant
1	1,232,471	A	G	Pathogenic	60488	no_assertion_criteria_provided	missense_variant
1	1,232,478	C	T	Pathogenic	60489	criteria_provided,_single_submitter	missense_variant
1	1,232,735	C	A	Benign	390636	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,232,744	G	A	Pathogenic	60486	no_assertion_criteria_provided	missense_variant
1	1,232,754	C	A	Pathogenic	869983	no_assertion_criteria_provided	missense_variant
1	1,232,800	G	C	Benign	281204	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,232,834	T	C	Pathogenic	522415	criteria_provided,_single_submitter	missense_variant
1	1,232,896	C	G	Pathogenic	869985	no_assertion_criteria_provided	missense_variant
1	1,232,897	G	C	Pathogenic	60495	criteria_provided,_single_submitter	missense_variant
1	1,232,927	G	A	Pathogenic	60496	no_assertion_criteria_provided	missense_variant
1	1,233,044	C	T	Pathogenic	996067	criteria_provided,_single_submitter	missense_variant
1	1,233,177	G	C	Pathogenic	60487	no_assertion_criteria_provided	missense_variant
1	1,233,203	T	A	Pathogenic	60491	criteria_provided,_single_submitter	missense_variant
1	1,242,601	C	T	Benign	789547	criteria_provided,_single_submitter	missense_variant
1	1,242,864	G	C	Benign	772646	criteria_provided,_single_submitter	missense_variant
1	1,312,290	C	T	Pathogenic	2506981	no_assertion_criteria_provided	missense_variant
1	1,312,841	G	A	Pathogenic	2506979	no_assertion_criteria_provided	missense_variant
1	1,319,313	G	A	Pathogenic	2506980	no_assertion_criteria_provided	intron_variant,missense_variant
1	1,320,493	C	T	Pathogenic	2506982	no_assertion_criteria_provided	intron_variant,missense_variant
1	1,321,072	C	A	Pathogenic	2506983	no_assertion_criteria_provided	5_prime_UTR_variant,intron_variant,missense_variant
1	1,332,630	G	T	Benign	775486	criteria_provided,_single_submitter	missense_variant
1	1,334,108	G	A	Benign	1222088	criteria_provided,_single_submitter	missense_variant
1	1,336,290	G	A	Benign	2194805	criteria_provided,_single_submitter	missense_variant
1	1,336,404	G	A	Benign	1535754	criteria_provided,_single_submitter	missense_variant
1	1,338,168	T	C	Benign	1364784	criteria_provided,_single_submitter	missense_variant
1	1,338,617	A	T	Benign	1927325	criteria_provided,_single_submitter	missense_variant
1	1,340,312	G	A	Benign	1599156	criteria_provided,_single_submitter	missense_variant
1	1,340,424	G	C	Benign	599454	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,341,749	G	C	Benign	1611353	criteria_provided,_single_submitter	missense_variant
1	1,341,803	C	A	Benign	1041254	criteria_provided,_single_submitter	missense_variant
1	1,341,803	C	T	Benign	1169213	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,437,393	C	T	Benign	781924	criteria_provided,_single_submitter	missense_variant,synonymous_variant
1	1,439,425	G	C	Benign	1229112	criteria_provided,_single_submitter	3_prime_UTR_variant,missense_variant
1	1,454,394	C	T	Benign	1253304	criteria_provided,_single_submitter	missense_variant
1	1,477,279	G	T	Benign	780746	criteria_provided,_single_submitter	missense_variant
1	1,495,783	G	A	Benign	786444	criteria_provided,_single_submitter	missense_variant
1	1,495,785	C	T	Benign	767642	criteria_provided,_single_submitter	missense_variant
1	1,512,287	A	G	Benign	1675332	criteria_provided,_single_submitter	missense_variant
1	1,516,036	T	G	Pathogenic	828051	no_assertion_criteria_provided	5_prime_UTR_variant,missense_variant
1	1,523,535	C	T	Benign	791764	criteria_provided,_single_submitter	missense_variant
1	1,525,242	T	G	Pathogenic	637018	criteria_provided,_single_submitter	missense_variant
1	1,527,777	G	C	Benign	791767	criteria_provided,_single_submitter	missense_variant
1	1,535,427	C	T	Benign	1235425	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,535,616	G	A	Pathogenic	161194	no_assertion_criteria_provided	missense_variant
1	1,535,723	G	A	Pathogenic	161195	criteria_provided,_single_submitter	missense_variant
1	1,626,711	G	A	Benign	780208	criteria_provided,_single_submitter	missense_variant,non-coding_transcript_variant
1	1,757,140	C	A	Benign	791769	criteria_provided,_single_submitter	intron_variant,missense_variant
1	1,759,182	G	A	Benign	716793	criteria_provided,_single_submitter	intron_variant,missense_variant
1	1,759,828	G	A	Benign	716794	criteria_provided,_single_submitter	intron_variant,missense_variant
1	1,790,438	C	T	Benign	1424675	criteria_provided,_single_submitter	missense_variant
1	1,790,444	A	G	Benign	1551623	criteria_provided,_single_submitter	missense_variant
1	1,790,578	C	G	Benign	1610568	criteria_provided,_single_submitter	missense_variant
1	1,793,270	C	T	Benign	1594453	criteria_provided,_single_submitter	missense_variant
1	1,804,475	T	C	Benign	1472005	criteria_provided,_single_submitter	missense_variant
1	1,804,496	T	C	Pathogenic	521213	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,804,497	C	A	Pathogenic	812755	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant
1	1,804,502	C	A	Pathogenic	1194565	criteria_provided,_single_submitter	missense_variant
1	1,804,508	C	T	Pathogenic	1315581	no_assertion_criteria_provided	missense_variant
1	1,804,562	C	A	Pathogenic	995962	no_assertion_criteria_provided	5_prime_UTR_variant,missense_variant
1	1,806,503	A	T	Pathogenic	224715	criteria_provided,_multiple_submitters,_no_conflicts	5_prime_UTR_variant,missense_variant
1	1,806,512	C	A	Pathogenic	1315582	no_assertion_criteria_provided	5_prime_UTR_variant,missense_variant
1	1,806,513	C	A	Pathogenic	1700090	criteria_provided,_single_submitter	5_prime_UTR_variant,missense_variant
1	1,806,514	A	T	Pathogenic	1699320	criteria_provided,_single_submitter	5_prime_UTR_variant,missense_variant
1	1,806,515	T	C	Pathogenic	224711	criteria_provided,_multiple_submitters,_no_conflicts	5_prime_UTR_variant,missense_variant

End of preview. Expand in Data Studio

README.md exists but content is empty.

Downloads last month: 48

Size of downloaded dataset files:

798 kB

Size of the auto-converted Parquet files:

798 kB

Number of rows:

50,164

Collection including songlab/clinvar_vs_benign

GPN-Star

Collection

paper: https://www.biorxiv.org/content/10.1101/2025.09.21.677619v1 code: https://github.com/songlab-cal/gpn • 30 items • Updated Sep 23 • 5