GPN-Star
Collection
paper: https://www.biorxiv.org/content/10.1101/2025.09.21.677619v1 code: https://github.com/songlab-cal/gpn
•
30 items
•
Updated
•
5
Dataset Viewer
chrom
large_stringclasses 22
values | pos
int64 -1
249M
| ref
large_stringclasses 4
values | alt
large_stringclasses 4
values | consequence
large_stringclasses 38
values | rsid
large_stringlengths 3
12
| MAF
float64 0.01
0.5
| GPN-STAR-P
float64 -2.16
-0
⌀ | GPN-STAR-M
float64 -2.62
-0
⌀ | GPN-STAR-V
float64 -1.59
-0
⌀ |
|---|---|---|---|---|---|---|---|---|---|
1
| 11,008
|
C
|
G
|
pELS-flank
|
rs575272151
| 0.08896
| -1.249705
| -1.061854
| -1.155349
|
1
| 11,012
|
C
|
G
|
pELS-flank
|
rs544419019
| 0.08896
| -1.348111
| -1.06881
| -1.177783
|
1
| 13,110
|
G
|
A
|
intron_variant
|
rs540538026
| 0.05419
| -1.174194
| -1.227196
| -0.69685
|
1
| 13,116
|
T
|
G
|
intron_variant
|
rs62635286
| 0.1881
| -1.060079
| -1.377807
| -1.080737
|
1
| 13,118
|
A
|
G
|
intron_variant
|
rs200579949
| 0.1881
| -0.998693
| -1.261501
| -0.925108
|
1
| 13,273
|
G
|
C
|
non_coding_transcript_exon_variant
|
rs531730856
| 0.1452
| -0.190126
| -0.256205
| -0.335131
|
1
| 13,550
|
G
|
A
|
non_coding_transcript_exon_variant
|
rs554008981
| 0.00818
| -0.117785
| -0.880342
| -0.970508
|
1
| 14,464
|
A
|
T
|
non_coding_transcript_exon_variant
|
rs546169444
| 0.1871
| -1.176401
| -1.307355
| -1.212361
|
1
| 14,599
|
T
|
A
|
intron_variant
|
rs531646671
| 0.1605
| -1.063671
| -1.318237
| -1.077387
|
1
| 14,604
|
A
|
G
|
intron_variant
|
rs541940975
| 0.1605
| -0.950329
| -1.249355
| -0.943695
|
1
| 14,933
|
G
|
A
|
intron_variant
|
rs199856693
| 0.05112
| -1.230263
| -1.221468
| -1.005462
|
1
| 15,644
|
G
|
A
|
CA-CTCF-flank
|
rs564003018
| 0.00818
| -1.281618
| -1.348007
| -1.105975
|
1
| 15,774
|
G
|
A
|
CA-CTCF-flank
|
rs374029747
| 0.00818
| -1.27357
| -1.257411
| -1.079375
|
1
| 15,777
|
A
|
G
|
CA-CTCF-flank
|
rs568149713
| 0.01431
| -1.246319
| -1.174488
| -0.473648
|
1
| 15,820
|
G
|
T
|
non_coding_transcript_exon_variant
|
rs2691315
| 0.2751
| -1.343899
| -1.376414
| -0.07971
|
1
| 16,949
|
A
|
C
|
non_coding_transcript_exon_variant
|
rs199745162
| 0.01636
| -0.384202
| -0.043302
| -0.059319
|
1
| 18,643
|
G
|
A
|
intron_variant
|
rs564023708
| 0.00818
| -1.197565
| -1.205408
| -1.031601
|
1
| 18,849
|
C
|
G
|
intron_variant
|
rs533090414
| 0.009202
| -1.220385
| -1.247301
| -1.070858
|
1
| 30,923
|
G
|
T
|
intron_variant
|
rs806731
| 0.06237
| -1.032303
| -1.153865
| -0.562828
|
1
| 50,891
|
T
|
C
|
intergenic_variant
|
rs542415070
| 0.007157
| -0.298446
| -0.952029
| -1.005463
|
1
| 51,047
|
A
|
T
|
intergenic_variant
|
rs559500163
| 0.005112
| -0.790831
| -1.042062
| -0.965938
|
1
| 51,049
|
A
|
C
|
intergenic_variant
|
rs528344458
| 0.005112
| -0.727823
| -0.931468
| -1.054575
|
1
| 51,050
|
A
|
T
|
intergenic_variant
|
rs551668143
| 0.005112
| -0.80992
| -1.040099
| -1.03312
|
1
| 51,053
|
G
|
T
|
intergenic_variant
|
rs565211799
| 0.005112
| -0.803319
| -1.200257
| -1.099194
|
1
| 51,762
|
A
|
G
|
upstream_gene_variant
|
rs559190862
| 0.01227
| -1.305237
| -1.450356
| -1.138913
|
1
| 51,765
|
C
|
G
|
upstream_gene_variant
|
rs575564077
| 0.01227
| -1.328291
| -1.487568
| -1.155054
|
1
| 52,238
|
T
|
G
|
upstream_gene_variant
|
rs2691277
| 0.01227
| -0.93984
| -0.644308
| -1.123384
|
1
| 52,253
|
C
|
G
|
upstream_gene_variant
|
rs530867301
| 0.00818
| -0.917759
| -0.888252
| -1.034241
|
1
| 54,490
|
G
|
A
|
intergenic_variant
|
rs141149254
| 0.182
| -1.224139
| -1.180496
| -1.054215
|
1
| 54,712
|
T
|
C
|
intergenic_variant
|
rs552304420
| 0.02556
| -1.219481
| -1.358616
| -0.16039
|
1
| 54,945
|
C
|
A
|
intergenic_variant
|
rs569799965
| 0.007157
| -0.292546
| -0.633929
| -0.400873
|
1
| 55,164
|
C
|
A
|
intergenic_variant
|
rs3091274
| 0.005112
| -1.246704
| -1.314388
| -1.078037
|
1
| 58,814
|
G
|
A
|
non_coding_transcript_exon_variant
|
rs114420996
| 0.06748
| -0.476852
| -0.937233
| -0.988258
|
1
| 60,249
|
C
|
T
|
intron_variant
|
rs547227933
| 0.01636
| -1.187099
| -1.130229
| -1.111881
|
1
| 60,351
|
A
|
G
|
intron_variant
|
rs62637817
| 0.06646
| -1.21931
| -0.431355
| -0.980703
|
1
| 61,115
|
G
|
A
|
intron_variant
|
rs541415601
| 0.007157
| -1.264414
| -0.886918
| -0.903735
|
1
| 61,208
|
T
|
C
|
intron_variant
|
rs527362206
| 0.007157
| -1.201806
| -1.113268
| -1.16754
|
1
| 61,743
|
G
|
C
|
intron_variant
|
rs184286948
| 0.00818
| -1.119794
| -0.684045
| -0.601788
|
1
| 61,920
|
G
|
A
|
intron_variant
|
rs62637820
| 0.03885
| -1.385351
| -1.501005
| -1.196897
|
1
| 62,716
|
C
|
T
|
intron_variant
|
rs557590765
| 0.00818
| -1.21201
| -0.616524
| -1.083457
|
1
| 63,336
|
C
|
T
|
non_coding_transcript_exon_variant
|
rs62639100
| 0.01943
| -0.059464
| -0.034134
| -0.046846
|
1
| 63,671
|
G
|
A
|
non_coding_transcript_exon_variant
|
rs80011619
| 0.1043
| -0.132133
| -0.148891
| -0.251822
|
1
| 63,722
|
C
|
T
|
non_coding_transcript_exon_variant
|
rs552815263
| 0.007157
| -0.204985
| -0.16873
| -0.159945
|
1
| 64,649
|
A
|
C
|
upstream_gene_variant
|
rs181431124
| 0.03579
| -1.547016
| -1.724276
| -0.952969
|
1
| 64,931
|
G
|
A
|
upstream_gene_variant
|
rs62639104
| 0.06544
| -1.053782
| -0.98973
| -1.065527
|
1
| 66,219
|
A
|
T
|
CA-flank
|
rs181028663
| 0.005112
| -1.395312
| -1.553664
| -0.476693
|
1
| 67,107
|
A
|
G
|
intron_variant
|
rs545950684
| 0.007157
| -1.114293
| -1.157417
| -1.175669
|
1
| 67,580
|
T
|
A
|
intron_variant
|
rs571658168
| 0.01125
| -1.213364
| -1.355623
| -1.015284
|
1
| 68,362
|
C
|
T
|
intron_variant
|
rs532215594
| 0.00818
| -1.282341
| -1.203807
| -1.129712
|
1
| 73,490
|
T
|
C
|
intergenic_variant
|
rs558384541
| 0.01738
| -1.096774
| -0.225292
| -1.097802
|
1
| 74,790
|
C
|
G
|
intergenic_variant
|
rs13328700
| 0.02454
| -1.615872
| -1.807358
| -1.195177
|
1
| 74,792
|
G
|
A
|
intergenic_variant
|
rs13328684
| 0.02454
| -1.30278
| -1.412708
| -1.006337
|
1
| 77,726
|
C
|
T
|
intergenic_variant
|
rs540748103
| 0.007157
| -0.257355
| -0.342195
| -0.945961
|
1
| 78,061
|
C
|
G
|
intergenic_variant
|
rs550898066
| 0.01022
| -0.658762
| -0.870331
| -1.20249
|
1
| 81,260
|
C
|
T
|
intergenic_variant
|
rs571136476
| 0.04499
| -1.429514
| -1.540781
| -1.077925
|
1
| 84,183
|
C
|
G
|
intergenic_variant
|
rs570923646
| 0.007157
| -0.980737
| -0.685781
| -1.05742
|
1
| 85,022
|
G
|
A
|
intergenic_variant
|
rs552048778
| 0.01227
| -1.131673
| -1.059792
| -1.014586
|
1
| 86,028
|
T
|
C
|
intergenic_variant
|
rs114608975
| 0.06135
| -1.226664
| -1.386727
| -1.053714
|
1
| 86,192
|
G
|
A
|
intergenic_variant
|
rs548281277
| 0.00818
| -0.763206
| -0.712869
| -0.837166
|
1
| 87,021
|
T
|
C
|
intergenic_variant
|
rs188486692
| 0.01125
| -1.125176
| -1.227857
| -1.145051
|
1
| 88,169
|
C
|
T
|
intergenic_variant
|
rs940550
| 0.1554
| -1.428461
| -1.442942
| -0.696604
|
1
| 88,188
|
C
|
A
|
intergenic_variant
|
rs148331237
| 0.01022
| -1.131009
| -1.323958
| -0.741579
|
1
| 91,264
|
A
|
C
|
non_coding_transcript_exon_variant
|
rs550687227
| 0.00818
| -1.206023
| -1.047182
| -1.211489
|
1
| 91,340
|
C
|
G
|
non_coding_transcript_exon_variant
|
rs376250562
| 0.006135
| -1.507564
| -1.269775
| -1.225815
|
1
| 91,358
|
G
|
T
|
non_coding_transcript_exon_variant
|
rs370712517
| 0.006135
| -1.245972
| -0.509077
| -1.199935
|
1
| 91,421
|
T
|
C
|
non_coding_transcript_exon_variant
|
rs28619159
| 0.006135
| -0.896242
| -1.158081
| -1.141043
|
1
| 92,633
|
C
|
T
|
intron_variant
|
rs149776517
| 0.0409
| -1.244111
| -0.673477
| -0.402474
|
1
| 92,926
|
T
|
C
|
intron_variant
|
rs560926314
| 0.00818
| -1.162735
| -0.511446
| -0.3962
|
1
| 99,388
|
G
|
T
|
TF-flank
|
rs556128788
| 0.01022
| -1.250782
| -1.391735
| -0.990394
|
1
| 99,671
|
A
|
T
|
CA
|
rs146209971
| 0.01227
| -1.159537
| -1.240648
| -1.038864
|
1
| 100,858
|
T
|
C
|
intron_variant
|
rs368741663
| 0.04806
| -1.091756
| -0.906355
| -1.019485
|
1
| 104,281
|
T
|
C
|
intron_variant
|
rs576842010
| 0.02147
| -1.136944
| -1.170926
| -1.042843
|
1
| 108,030
|
G
|
T
|
intron_variant
|
rs550285297
| 0.05419
| -1.145984
| -1.088217
| -0.833737
|
1
| 108,506
|
C
|
T
|
intron_variant
|
rs555296411
| 0.005112
| -1.218235
| -1.079489
| -1.199889
|
1
| 108,929
|
C
|
G
|
intron_variant
|
rs62642118
| 0.01227
| -1.251087
| -1.304719
| -0.96782
|
1
| 109,503
|
G
|
A
|
intron_variant
|
rs372054918
| 0.005112
| -1.269644
| -1.223986
| -0.840954
|
1
| 115,746
|
C
|
T
|
CA-CTCF
|
rs147538909
| 0.05317
| -1.227503
| -0.541373
| -1.112294
|
1
| 125,271
|
C
|
T
|
intron_variant
|
rs377100675
| 0.02761
| -1.171773
| -1.212446
| -1.075579
|
1
| 125,957
|
G
|
A
|
intron_variant
|
rs373850854
| 0.006135
| -1.211044
| -0.974388
| -0.952915
|
1
| 135,195
|
A
|
G
|
non_coding_transcript_exon_variant
|
rs554762511
| 0.01431
| -1.603612
| -1.612861
| -0.945531
|
1
| 135,203
|
G
|
A
|
non_coding_transcript_exon_variant
|
rs147502335
| 0.05317
| -1.022213
| -1.229874
| -1.088582
|
1
| 135,982
|
A
|
G
|
TF-flank
|
rs62642131
| 0.01534
| -1.461471
| -1.714879
| -1.113556
|
1
| 136,113
|
C
|
T
|
TF-flank
|
rs546872994
| 0.02761
| -1.044777
| -1.113025
| -1.146959
|
1
| 136,131
|
C
|
G
|
TF-flank
|
rs566659709
| 0.005112
| -1.394906
| -1.592692
| -0.91667
|
1
| 138,041
|
G
|
A
|
upstream_gene_variant
|
rs560358882
| 0.005112
| -1.091624
| -1.047561
| -0.177452
|
1
| 138,396
|
G
|
A
|
upstream_gene_variant
|
rs568894656
| 0.009202
| -1.52478
| -1.348367
| -1.082983
|
1
| 138,593
|
G
|
T
|
pELS-flank
|
rs375595668
| 0.1033
| -1.078854
| -1.267542
| -1.032738
|
1
| 138,817
|
T
|
C
|
TF-flank
|
rs556938922
| 0.005112
| -1.185063
| -1.432394
| -1.090173
|
1
| 158,006
|
A
|
T
|
intron_variant
|
rs371474651
| 0.2658
| -0.384229
| -0.353491
| -1.15554
|
1
| 173,052
|
C
|
A
|
intron_variant
|
rs564576411
| 0.07464
| -0.539234
| -1.467818
| -0.517853
|
1
| 260,354
|
G
|
C
|
intron_variant
|
rs201347561
| 0.005112
| -0.871773
| -0.351529
| -1.177337
|
1
| 262,698
|
G
|
A
|
intron_variant
|
rs144169752
| 0.1288
| -1.105148
| -1.202025
| -0.845601
|
1
| 263,722
|
C
|
G
|
non_coding_transcript_exon_variant
|
rs112455420
| 0.1258
| -0.375894
| -0.815178
| -1.210203
|
1
| 263,725
|
G
|
A
|
non_coding_transcript_exon_variant
|
rs141415251
| 0.007157
| -0.696791
| -0.905397
| -1.05071
|
1
| 264,657
|
A
|
G
|
non_coding_transcript_exon_variant
|
rs111659307
| 0.01329
| -0.639959
| -0.216493
| -1.191107
|
1
| 267,754
|
T
|
C
|
non_coding_transcript_exon_variant
|
rs367639380
| 0.02352
| -1.477017
| -1.655819
| -1.169847
|
1
| 275,631
|
C
|
T
|
intron_variant
|
rs553390348
| 0.00818
| -1.323801
| -1.49946
| -0.999218
|
1
| 279,525
|
T
|
C
|
intron_variant
|
rs115018998
| 0.02045
| -1.565134
| -1.742542
| -0.595163
|
1
| 279,901
|
G
|
C
|
intron_variant
|
rs538729150
| 0.01022
| -0.586762
| -0.809885
| -0.606344
|
1
| 285,882
|
A
|
G
|
intron_variant
|
rs375136935
| 0.05726
| -1.401851
| -1.271983
| -0.53706
|
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Size of downloaded dataset files:
211 MB
Size of the auto-converted Parquet files:
211 MB
Number of rows:
9,997,231