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| title: Helix Mind – Bioinformatics Toolkit | |
| emoji: 🧬 | |
| colorFrom: green | |
| colorTo: blue | |
| sdk: gradio | |
| app_file: app.py | |
| pinned: false | |
| license: gpl-3.0 | |
| sdk_version: 5.42.0 | |
| # Helix Mind – Bioinformatics Toolkit | |
| Helix Mind is an easy-to-use bioinformatics web app that brings together multiple tools for sequence analysis, literature search, and 3D visualization — all in one place. | |
| ## 🔬 Features | |
| - **FASTA File Analysis** – Upload your FASTA file to view sequence statistics like GC content and length. | |
| - **BLAST Search** – Run BLAST directly in the app to find sequence similarities. | |
| - **PubMed Search** – Look up relevant scientific articles quickly. | |
| - **KEGG Pathways** – Explore metabolic and molecular pathways. | |
| - **3D Structure Viewer** – Visualize protein and nucleic acid structures by PDB ID. | |
| - **AI Assistant** – Get intelligent responses powered by ChatGPT (if API key is provided). | |
| ## 🖥 How to Use | |
| 1. Upload your FASTA file or enter sequence data. | |
| 2. Select the tool you want to use (BLAST, PubMed, KEGG, etc.). | |
| 3. View results instantly in the browser. | |
| 4. For AI Assistant, enter your OpenAI API key in the input field. | |
| ## 📦 Installation (Local) | |
| If you want to run it locally instead of Hugging Face: | |
| ```bash | |
| git clone https://github.com/biostackaryan/helixmind.git | |
| cd helixmind | |
| pip install -r requirements.txt | |
| python app.py |