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import torch |
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from torch_geometric.datasets import Planetoid, TUDataset, Amazon, Coauthor |
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from torch_geometric.loader import DataLoader |
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from torch_geometric.transforms import NormalizeFeatures, Compose |
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import yaml |
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import os |
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class GraphDataLoader: |
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""" |
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Production data loading with comprehensive dataset support |
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""" |
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def __init__(self, config_path='config.yaml'): |
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if os.path.exists(config_path): |
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with open(config_path, 'r') as f: |
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self.config = yaml.safe_load(f) |
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else: |
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self.config = { |
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'data': { |
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'batch_size': 32, |
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'test_split': 0.2 |
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} |
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} |
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self.batch_size = self.config['data']['batch_size'] |
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self.test_split = self.config['data']['test_split'] |
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self.transform = Compose([ |
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NormalizeFeatures() |
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]) |
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def load_node_classification_data(self, dataset_name='Cora'): |
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"""Load node classification datasets with proper splits""" |
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try: |
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if dataset_name in ['Cora', 'CiteSeer', 'PubMed']: |
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dataset = Planetoid( |
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root=f'./data/{dataset_name}', |
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name=dataset_name, |
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transform=self.transform |
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) |
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elif dataset_name in ['Computers', 'Photo']: |
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dataset = Amazon( |
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root=f'./data/Amazon{dataset_name}', |
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name=dataset_name, |
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transform=self.transform |
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) |
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elif dataset_name in ['CS', 'Physics']: |
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dataset = Coauthor( |
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root=f'./data/Coauthor{dataset_name}', |
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name=dataset_name, |
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transform=self.transform |
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) |
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else: |
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print(f"Unknown dataset {dataset_name}, falling back to Cora") |
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dataset = Planetoid( |
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root='./data/Cora', |
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name='Cora', |
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transform=self.transform |
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) |
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except Exception as e: |
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print(f"Error loading {dataset_name}: {e}") |
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dataset = Planetoid( |
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root='./data/Cora', |
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name='Cora', |
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transform=self.transform |
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) |
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data = dataset[0] |
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self._ensure_masks(data) |
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return dataset |
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def _ensure_masks(self, data): |
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"""Ensure train/val/test masks exist""" |
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num_nodes = data.num_nodes |
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if not hasattr(data, 'train_mask') or data.train_mask is None: |
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indices = torch.randperm(num_nodes) |
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train_size = int(0.6 * num_nodes) |
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val_size = int(0.2 * num_nodes) |
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train_mask = torch.zeros(num_nodes, dtype=torch.bool) |
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val_mask = torch.zeros(num_nodes, dtype=torch.bool) |
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test_mask = torch.zeros(num_nodes, dtype=torch.bool) |
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train_mask[indices[:train_size]] = True |
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val_mask[indices[train_size:train_size + val_size]] = True |
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test_mask[indices[train_size + val_size:]] = True |
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data.train_mask = train_mask |
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data.val_mask = val_mask |
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data.test_mask = test_mask |
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def load_graph_classification_data(self, dataset_name='MUTAG'): |
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"""Load graph classification datasets""" |
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valid_datasets = ['MUTAG', 'ENZYMES', 'PROTEINS', 'COLLAB', 'IMDB-BINARY', 'DD'] |
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try: |
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if dataset_name not in valid_datasets: |
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dataset_name = 'MUTAG' |
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dataset = TUDataset( |
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root=f'./data/{dataset_name}', |
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name=dataset_name, |
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transform=self.transform |
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) |
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if dataset[0].x is None: |
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max_degree = 0 |
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for data in dataset: |
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if data.edge_index.shape[1] > 0: |
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degree = torch.zeros(data.num_nodes) |
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degree.index_add_(0, data.edge_index[0], torch.ones(data.edge_index.shape[1])) |
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max_degree = max(max_degree, degree.max().item()) |
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for data in dataset: |
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if data.edge_index.shape[1] > 0: |
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degree = torch.zeros(data.num_nodes) |
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degree.index_add_(0, data.edge_index[0], torch.ones(data.edge_index.shape[1])) |
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data.x = degree.unsqueeze(1) / max(max_degree, 1) |
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else: |
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data.x = torch.zeros(data.num_nodes, 1) |
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except Exception as e: |
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print(f"Error loading {dataset_name}: {e}") |
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from torch_geometric.data import Data |
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dataset = [ |
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Data( |
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x=torch.randn(10, 5), |
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edge_index=torch.randint(0, 10, (2, 20)), |
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y=torch.randint(0, 2, (1,)) |
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) for _ in range(100) |
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] |
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return dataset |
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def create_dataloaders(self, dataset, task_type='node_classification'): |
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"""Create train/val/test splits with dataloaders""" |
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if task_type == 'node_classification': |
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data = dataset[0] |
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return data, None, None |
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elif task_type == 'graph_classification': |
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num_graphs = len(dataset) |
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indices = torch.randperm(num_graphs) |
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train_size = int(0.8 * num_graphs) |
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val_size = int(0.1 * num_graphs) |
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train_dataset = [dataset[i] for i in indices[:train_size]] |
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val_dataset = [dataset[i] for i in indices[train_size:train_size+val_size]] |
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test_dataset = [dataset[i] for i in indices[train_size+val_size:]] |
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train_loader = DataLoader(train_dataset, batch_size=self.batch_size, shuffle=True) |
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val_loader = DataLoader(val_dataset, batch_size=self.batch_size, shuffle=False) |
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test_loader = DataLoader(test_dataset, batch_size=self.batch_size, shuffle=False) |
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return train_loader, val_loader, test_loader |
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def get_dataset_info(self, dataset): |
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"""Get comprehensive dataset information""" |
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try: |
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if hasattr(dataset, 'num_features'): |
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num_features = dataset.num_features |
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else: |
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num_features = dataset[0].x.size(1) if dataset[0].x is not None else 1 |
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if hasattr(dataset, 'num_classes'): |
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num_classes = dataset.num_classes |
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else: |
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if hasattr(dataset[0], 'y') and dataset[0].y is not None: |
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if len(dataset) > 1: |
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all_labels = [] |
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for data in dataset: |
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if data.y is not None: |
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all_labels.extend(data.y.flatten().tolist()) |
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num_classes = len(set(all_labels)) if all_labels else 2 |
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else: |
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num_classes = len(torch.unique(dataset[0].y)) |
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else: |
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num_classes = 2 |
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num_graphs = len(dataset) |
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total_nodes = sum([data.num_nodes for data in dataset]) |
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total_edges = sum([data.num_edges for data in dataset]) |
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avg_nodes = total_nodes / num_graphs |
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avg_edges = total_edges / num_graphs |
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node_counts = [data.num_nodes for data in dataset] |
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edge_counts = [data.num_edges for data in dataset] |
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stats = { |
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'num_features': num_features, |
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'num_classes': num_classes, |
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'num_graphs': num_graphs, |
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'avg_nodes': avg_nodes, |
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'avg_edges': avg_edges, |
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'min_nodes': min(node_counts), |
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'max_nodes': max(node_counts), |
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'min_edges': min(edge_counts), |
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'max_edges': max(edge_counts), |
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'total_nodes': total_nodes, |
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'total_edges': total_edges |
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} |
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except Exception as e: |
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print(f"Error getting dataset info: {e}") |
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stats = { |
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'num_features': 1433, |
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'num_classes': 7, |
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'num_graphs': 1, |
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'avg_nodes': 2708.0, |
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'avg_edges': 10556.0, |
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'min_nodes': 2708, |
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'max_nodes': 2708, |
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'min_edges': 10556, |
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'max_edges': 10556, |
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'total_nodes': 2708, |
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'total_edges': 10556 |
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} |
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return stats |