dataset_info:
- config_name: default
features:
- name: id
dtype: string
- name: text
dtype: string
- name: tokens
sequence: string
- name: start_offsets
sequence: uint32
- name: labels
sequence:
class_label:
names:
'0': O
'1': B-PROGRAMMINGENVIRONMENT
'2': I-PROGRAMMINGENVIRONMENT
'3': B-SOFTWARECOREFERENCE
'4': I-SOFTWARECOREFERENCE
'5': B-APPLICATION
'6': I-APPLICATION
'7': B-PLUGIN
'8': I-PLUGIN
'9': B-OPERATINGSYSTEM
'10': I-OPERATINGSYSTEM
'11': B-ALTERNATIVENAME
'12': I-ALTERNATIVENAME
'13': B-URL
'14': I-URL
'15': B-ABBREVIATION
'16': I-ABBREVIATION
'17': B-LICENSE
'18': I-LICENSE
'19': B-CITATION
'20': I-CITATION
'21': B-VERSION
'22': I-VERSION
'23': B-EXTENSION
'24': I-EXTENSION
'25': B-RELEASE
'26': I-RELEASE
'27': B-DEVELOPER
'28': I-DEVELOPER
- name: software
sequence:
- name: name
dtype: string
- name: type
dtype: string
- name: alternativename
dtype: string
- name: url
sequence: string
- name: abbreviation
sequence: string
- name: license
sequence: string
- name: citation
sequence: string
- name: version
sequence: string
- name: extension
sequence: string
- name: release
sequence: string
- name: developer
sequence: string
splits:
- name: test
num_bytes: 10731426
num_examples: 97
download_size: 3467360
dataset_size: 10731426
- config_name: plos_methods
features:
- name: id
dtype: string
- name: text
dtype: string
- name: tokens
sequence: string
- name: start_offsets
sequence: uint32
- name: labels
sequence:
class_label:
names:
'0': O
'1': B-PROGRAMMINGENVIRONMENT
'2': I-PROGRAMMINGENVIRONMENT
'3': B-SOFTWARECOREFERENCE
'4': I-SOFTWARECOREFERENCE
'5': B-APPLICATION
'6': I-APPLICATION
'7': B-PLUGIN
'8': I-PLUGIN
'9': B-OPERATINGSYSTEM
'10': I-OPERATINGSYSTEM
'11': B-ALTERNATIVENAME
'12': I-ALTERNATIVENAME
'13': B-URL
'14': I-URL
'15': B-ABBREVIATION
'16': I-ABBREVIATION
'17': B-LICENSE
'18': I-LICENSE
'19': B-CITATION
'20': I-CITATION
'21': B-VERSION
'22': I-VERSION
'23': B-EXTENSION
'24': I-EXTENSION
'25': B-RELEASE
'26': I-RELEASE
'27': B-DEVELOPER
'28': I-DEVELOPER
- name: software
sequence:
- name: name
dtype: string
- name: type
dtype: string
- name: alternativename
dtype: string
- name: url
sequence: string
- name: abbreviation
sequence: string
- name: license
sequence: string
- name: citation
sequence: string
- name: version
sequence: string
- name: extension
sequence: string
- name: release
sequence: string
- name: developer
sequence: string
splits:
- name: test
num_bytes: 19566214
num_examples: 480
download_size: 5865285
dataset_size: 19566214
- config_name: plos_sentences
features:
- name: id
dtype: string
- name: text
dtype: string
- name: tokens
sequence: string
- name: start_offsets
sequence: uint32
- name: labels
sequence:
class_label:
names:
'0': O
'1': B-PROGRAMMINGENVIRONMENT
'2': I-PROGRAMMINGENVIRONMENT
'3': B-SOFTWARECOREFERENCE
'4': I-SOFTWARECOREFERENCE
'5': B-APPLICATION
'6': I-APPLICATION
'7': B-PLUGIN
'8': I-PLUGIN
'9': B-OPERATINGSYSTEM
'10': I-OPERATINGSYSTEM
'11': B-ALTERNATIVENAME
'12': I-ALTERNATIVENAME
'13': B-URL
'14': I-URL
'15': B-ABBREVIATION
'16': I-ABBREVIATION
'17': B-LICENSE
'18': I-LICENSE
'19': B-CITATION
'20': I-CITATION
'21': B-VERSION
'22': I-VERSION
'23': B-EXTENSION
'24': I-EXTENSION
'25': B-RELEASE
'26': I-RELEASE
'27': B-DEVELOPER
'28': I-DEVELOPER
- name: software
sequence:
- name: name
dtype: string
- name: type
dtype: string
- name: alternativename
dtype: string
- name: url
sequence: string
- name: abbreviation
sequence: string
- name: license
sequence: string
- name: citation
sequence: string
- name: version
sequence: string
- name: extension
sequence: string
- name: release
sequence: string
- name: developer
sequence: string
splits:
- name: test
num_bytes: 526571
num_examples: 677
download_size: 155526
dataset_size: 526571
- config_name: pubmed_fulltext
features:
- name: id
dtype: string
- name: text
dtype: string
- name: tokens
sequence: string
- name: start_offsets
sequence: uint32
- name: labels
sequence:
class_label:
names:
'0': O
'1': B-PROGRAMMINGENVIRONMENT
'2': I-PROGRAMMINGENVIRONMENT
'3': B-SOFTWARECOREFERENCE
'4': I-SOFTWARECOREFERENCE
'5': B-APPLICATION
'6': I-APPLICATION
'7': B-PLUGIN
'8': I-PLUGIN
'9': B-OPERATINGSYSTEM
'10': I-OPERATINGSYSTEM
'11': B-ALTERNATIVENAME
'12': I-ALTERNATIVENAME
'13': B-URL
'14': I-URL
'15': B-ABBREVIATION
'16': I-ABBREVIATION
'17': B-LICENSE
'18': I-LICENSE
'19': B-CITATION
'20': I-CITATION
'21': B-VERSION
'22': I-VERSION
'23': B-EXTENSION
'24': I-EXTENSION
'25': B-RELEASE
'26': I-RELEASE
'27': B-DEVELOPER
'28': I-DEVELOPER
- name: software
sequence:
- name: name
dtype: string
- name: type
dtype: string
- name: alternativename
dtype: string
- name: url
sequence: string
- name: abbreviation
sequence: string
- name: license
sequence: string
- name: citation
sequence: string
- name: version
sequence: string
- name: extension
sequence: string
- name: release
sequence: string
- name: developer
sequence: string
splits:
- name: test
num_bytes: 10731426
num_examples: 97
download_size: 3467360
dataset_size: 10731426
configs:
- config_name: default
data_files:
- split: test
path: data/test-*
- config_name: plos_methods
data_files:
- split: test
path: plos_methods/test-*
- config_name: plos_sentences
data_files:
- split: test
path: plos_sentences/test-*
- config_name: pubmed_fulltext
data_files:
- split: test
path: pubmed_fulltext/test-*
SoMeSci Dataset
SoMeSci dataset is a dataset of software mentions in scientific papers. This dataset was converted from the original GitHUB repository SoMeSci.
The original upload is containing some documents without content. These documents are removed from this dataset.
Configurations
This dataset is available in three configurations that corresponds to original SoMeSci subsets:
pubmed_fulltext
(default)plos_methods
plos_sentences
Fields description
All configurations contain the following fields:
id
: The unique identifier of the example. Corresponds to sample file name in the original dataset.text
: The text of the paragraph or the full text of the paper.tokens
: Tokenized text for which the labels are provided.start_offsets
: The start character offsets of the tokens in the text.labels
: The labels of the tokens. The labels are in the BIO format:0
: O1
: B-PROGRAMMINGENVIRONMENT2
: I-PROGRAMMINGENVIRONMENT3
: B-SOFTWARECOREFERENCE4
: I-SOFTWARECOREFERENCE5
: B-APPLICATION6
: I-APPLICATION7
: B-PLUGIN8
: I-PLUGIN9
: B-OPERATINGSYSTEM10
: I-OPERATINGSYSTEM11
: B-ALTERNATIVENAME12
: I-ALTERNATIVENAME13
: B-URL14
: I-URL15
: B-ABBREVIATION16
: I-ABBREVIATION17
: B-LICENSE18
: I-LICENSE19
: B-CITATION20
: I-CITATION21
: B-VERSION22
: I-VERSION23
: B-EXTENSION24
: I-EXTENSION25
: B-RELEASE26
: I-RELEASE27
: B-DEVELOPER28
: I-DEVELOPER
software
: Document level software mentions. Contains the following fields:name
type
alternativename
url
abbreviation
license
citation
version
extension
release
developer
Disambiguation is done on lexical level. Meaning that two software names are considered different if they have different normalized forms.