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--- |
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dataset_info: |
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- config_name: default |
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features: |
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- name: id |
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dtype: string |
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|
- name: text |
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|
dtype: string |
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|
- name: tokens |
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|
sequence: string |
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- name: start_offsets |
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sequence: uint32 |
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- name: labels |
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|
sequence: |
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|
class_label: |
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names: |
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|
'0': O |
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|
'1': B-PROGRAMMINGENVIRONMENT |
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'2': I-PROGRAMMINGENVIRONMENT |
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|
'3': B-SOFTWARECOREFERENCE |
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'4': I-SOFTWARECOREFERENCE |
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|
'5': B-APPLICATION |
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'6': I-APPLICATION |
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|
'7': B-PLUGIN |
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|
'8': I-PLUGIN |
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|
'9': B-OPERATINGSYSTEM |
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'10': I-OPERATINGSYSTEM |
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'11': B-ALTERNATIVENAME |
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'12': I-ALTERNATIVENAME |
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'13': B-URL |
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|
'14': I-URL |
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'15': B-ABBREVIATION |
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'16': I-ABBREVIATION |
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|
'17': B-LICENSE |
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'18': I-LICENSE |
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'19': B-CITATION |
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'20': I-CITATION |
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'21': B-VERSION |
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'22': I-VERSION |
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'23': B-EXTENSION |
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'24': I-EXTENSION |
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'25': B-RELEASE |
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'26': I-RELEASE |
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'27': B-DEVELOPER |
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'28': I-DEVELOPER |
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|
- name: software |
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sequence: |
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- name: name |
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dtype: string |
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- name: type |
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dtype: string |
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- name: alternativename |
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|
dtype: string |
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|
- name: url |
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sequence: string |
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|
- name: abbreviation |
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sequence: string |
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- name: license |
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sequence: string |
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- name: citation |
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sequence: string |
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- name: version |
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sequence: string |
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- name: extension |
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sequence: string |
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- name: release |
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sequence: string |
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- name: developer |
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sequence: string |
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splits: |
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- name: test |
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num_bytes: 10731426 |
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num_examples: 97 |
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download_size: 3467360 |
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dataset_size: 10731426 |
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- config_name: plos_methods |
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features: |
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- name: id |
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dtype: string |
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- name: text |
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dtype: string |
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- name: tokens |
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sequence: string |
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- name: start_offsets |
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sequence: uint32 |
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- name: labels |
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sequence: |
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class_label: |
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names: |
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'0': O |
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'1': B-PROGRAMMINGENVIRONMENT |
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'2': I-PROGRAMMINGENVIRONMENT |
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|
'3': B-SOFTWARECOREFERENCE |
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'4': I-SOFTWARECOREFERENCE |
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|
'5': B-APPLICATION |
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'6': I-APPLICATION |
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'7': B-PLUGIN |
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'8': I-PLUGIN |
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'9': B-OPERATINGSYSTEM |
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'10': I-OPERATINGSYSTEM |
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|
'11': B-ALTERNATIVENAME |
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'12': I-ALTERNATIVENAME |
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'13': B-URL |
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'14': I-URL |
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|
'15': B-ABBREVIATION |
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|
'16': I-ABBREVIATION |
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|
'17': B-LICENSE |
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|
'18': I-LICENSE |
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|
'19': B-CITATION |
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|
'20': I-CITATION |
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|
'21': B-VERSION |
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'22': I-VERSION |
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|
'23': B-EXTENSION |
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'24': I-EXTENSION |
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|
'25': B-RELEASE |
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'26': I-RELEASE |
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'27': B-DEVELOPER |
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'28': I-DEVELOPER |
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|
- name: software |
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sequence: |
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- name: name |
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dtype: string |
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|
- name: type |
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|
dtype: string |
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|
- name: alternativename |
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|
dtype: string |
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|
- name: url |
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sequence: string |
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|
- name: abbreviation |
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sequence: string |
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- name: license |
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sequence: string |
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- name: citation |
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sequence: string |
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- name: version |
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sequence: string |
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- name: extension |
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sequence: string |
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- name: release |
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sequence: string |
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- name: developer |
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sequence: string |
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splits: |
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- name: test |
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num_bytes: 19566214 |
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num_examples: 480 |
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download_size: 5865285 |
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dataset_size: 19566214 |
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- config_name: plos_sentences |
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features: |
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- name: id |
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dtype: string |
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|
- name: text |
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|
dtype: string |
|
|
- name: tokens |
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sequence: string |
|
|
- name: start_offsets |
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|
sequence: uint32 |
|
|
- name: labels |
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sequence: |
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class_label: |
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names: |
|
|
'0': O |
|
|
'1': B-PROGRAMMINGENVIRONMENT |
|
|
'2': I-PROGRAMMINGENVIRONMENT |
|
|
'3': B-SOFTWARECOREFERENCE |
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|
'4': I-SOFTWARECOREFERENCE |
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|
'5': B-APPLICATION |
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|
'6': I-APPLICATION |
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|
'7': B-PLUGIN |
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|
'8': I-PLUGIN |
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|
'9': B-OPERATINGSYSTEM |
|
|
'10': I-OPERATINGSYSTEM |
|
|
'11': B-ALTERNATIVENAME |
|
|
'12': I-ALTERNATIVENAME |
|
|
'13': B-URL |
|
|
'14': I-URL |
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|
'15': B-ABBREVIATION |
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|
'16': I-ABBREVIATION |
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|
'17': B-LICENSE |
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'18': I-LICENSE |
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'19': B-CITATION |
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'20': I-CITATION |
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'21': B-VERSION |
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'22': I-VERSION |
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|
'23': B-EXTENSION |
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'24': I-EXTENSION |
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|
'25': B-RELEASE |
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|
'26': I-RELEASE |
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|
'27': B-DEVELOPER |
|
|
'28': I-DEVELOPER |
|
|
- name: software |
|
|
sequence: |
|
|
- name: name |
|
|
dtype: string |
|
|
- name: type |
|
|
dtype: string |
|
|
- name: alternativename |
|
|
dtype: string |
|
|
- name: url |
|
|
sequence: string |
|
|
- name: abbreviation |
|
|
sequence: string |
|
|
- name: license |
|
|
sequence: string |
|
|
- name: citation |
|
|
sequence: string |
|
|
- name: version |
|
|
sequence: string |
|
|
- name: extension |
|
|
sequence: string |
|
|
- name: release |
|
|
sequence: string |
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- name: developer |
|
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sequence: string |
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splits: |
|
|
- name: test |
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|
num_bytes: 526571 |
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|
num_examples: 677 |
|
|
download_size: 155526 |
|
|
dataset_size: 526571 |
|
|
- config_name: pubmed_fulltext |
|
|
features: |
|
|
- name: id |
|
|
dtype: string |
|
|
- name: text |
|
|
dtype: string |
|
|
- name: tokens |
|
|
sequence: string |
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|
- name: start_offsets |
|
|
sequence: uint32 |
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- name: labels |
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sequence: |
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class_label: |
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names: |
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'0': O |
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'1': B-PROGRAMMINGENVIRONMENT |
|
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'2': I-PROGRAMMINGENVIRONMENT |
|
|
'3': B-SOFTWARECOREFERENCE |
|
|
'4': I-SOFTWARECOREFERENCE |
|
|
'5': B-APPLICATION |
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'6': I-APPLICATION |
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'7': B-PLUGIN |
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|
'8': I-PLUGIN |
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|
'9': B-OPERATINGSYSTEM |
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|
'10': I-OPERATINGSYSTEM |
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|
'11': B-ALTERNATIVENAME |
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'12': I-ALTERNATIVENAME |
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'13': B-URL |
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|
'14': I-URL |
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|
'15': B-ABBREVIATION |
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|
'16': I-ABBREVIATION |
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|
'17': B-LICENSE |
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'18': I-LICENSE |
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'19': B-CITATION |
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'20': I-CITATION |
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'21': B-VERSION |
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'22': I-VERSION |
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'23': B-EXTENSION |
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'24': I-EXTENSION |
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'25': B-RELEASE |
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'26': I-RELEASE |
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'27': B-DEVELOPER |
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'28': I-DEVELOPER |
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|
- name: software |
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sequence: |
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- name: name |
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dtype: string |
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- name: type |
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dtype: string |
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- name: alternativename |
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dtype: string |
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- name: url |
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sequence: string |
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- name: abbreviation |
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sequence: string |
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- name: license |
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sequence: string |
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- name: citation |
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sequence: string |
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- name: version |
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sequence: string |
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- name: extension |
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sequence: string |
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- name: release |
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sequence: string |
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- name: developer |
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sequence: string |
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splits: |
|
|
- name: test |
|
|
num_bytes: 10731426 |
|
|
num_examples: 97 |
|
|
download_size: 3467360 |
|
|
dataset_size: 10731426 |
|
|
configs: |
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- config_name: default |
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data_files: |
|
|
- split: test |
|
|
path: data/test-* |
|
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- config_name: plos_methods |
|
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data_files: |
|
|
- split: test |
|
|
path: plos_methods/test-* |
|
|
- config_name: plos_sentences |
|
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data_files: |
|
|
- split: test |
|
|
path: plos_sentences/test-* |
|
|
- config_name: pubmed_fulltext |
|
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data_files: |
|
|
- split: test |
|
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path: pubmed_fulltext/test-* |
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--- |
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# SoMeSci Dataset |
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SoMeSci dataset is a dataset of software mentions in scientific papers. This dataset was converted from the original GitHUB repository [SoMeSci](https://github.com/dave-s477/SoMeSci). |
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The original upload is containing some documents without content. These documents are removed from this dataset. |
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## Configurations |
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This dataset is available in three configurations that corresponds to original SoMeSci subsets: |
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- `pubmed_fulltext` (default) |
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- `plos_methods` |
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- `plos_sentences` |
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## Fields description |
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All configurations contain the following fields: |
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- `id`: The unique identifier of the example. Corresponds to sample file name in the original dataset. |
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- `text`: The text of the paragraph or the full text of the paper. |
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- `tokens`: Tokenized text for which the labels are provided. |
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- `start_offsets`: The start character offsets of the tokens in the text. |
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- `labels`: The labels of the tokens. The labels are in the BIO format: |
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- `0`: O |
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- `1`: B-PROGRAMMINGENVIRONMENT |
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- `2`: I-PROGRAMMINGENVIRONMENT |
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- `3`: B-SOFTWARECOREFERENCE |
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- `4`: I-SOFTWARECOREFERENCE |
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- `5`: B-APPLICATION |
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- `6`: I-APPLICATION |
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- `7`: B-PLUGIN |
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- `8`: I-PLUGIN |
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- `9`: B-OPERATINGSYSTEM |
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- `10`: I-OPERATINGSYSTEM |
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- `11`: B-ALTERNATIVENAME |
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- `12`: I-ALTERNATIVENAME |
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- `13`: B-URL |
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- `14`: I-URL |
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- `15`: B-ABBREVIATION |
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- `16`: I-ABBREVIATION |
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- `17`: B-LICENSE |
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- `18`: I-LICENSE |
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- `19`: B-CITATION |
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- `20`: I-CITATION |
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- `21`: B-VERSION |
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- `22`: I-VERSION |
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- `23`: B-EXTENSION |
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- `24`: I-EXTENSION |
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- `25`: B-RELEASE |
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- `26`: I-RELEASE |
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- `27`: B-DEVELOPER |
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- `28`: I-DEVELOPER |
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- `software`: Document level software mentions. Contains the following fields: |
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- `name` |
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- `type` |
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- `alternativename` |
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- `url` |
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- `abbreviation` |
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- `license` |
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- `citation` |
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- `version` |
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- `extension` |
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- `release` |
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- `developer` |
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Disambiguation is done on lexical level. Meaning that two software names are considered different if they have different normalized forms. |
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